RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 SCUBE3Q8IX30 993 aa20.17■□□□□ 0.82
PTCH1-227ENST00000553256 DDX1Q92499 740 aaKnown RBP20.17■□□□□ 0.82
PTCH1-227ENST00000553256 PNKPQ96T60 521 aa20.17■□□□□ 0.82
PTCH1-227ENST00000553256 LHX5Q9H2C1 402 aa20.17■□□□□ 0.82
PTCH1-227ENST00000553256 EPC1Q9H2F5 836 aa20.17■□□□□ 0.82
PTCH1-227ENST00000553256 OLA1Q9NTK5 396 aaKnown RBP20.17■□□□□ 0.82
PTCH1-227ENST00000553256 SIK3Q9Y2K2 1263 aa20.17■□□□□ 0.82
PTCH1-227ENST00000553256 ATG2BQ96BY7 2078 aa20.17■□□□□ 0.82
PTCH1-227ENST00000553256 EPHB6O15197 1021 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 THAP12O43422 761 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 MED7O43513 233 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 KAT7O95251 611 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 LTFP02788 710 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 CORO1AP31146 461 aaKnown RBP20.16■□□□□ 0.82
PTCH1-227ENST00000553256 KLK7P49862 253 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 PDCLQ13371 301 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 DRAP1Q14919 205 aaPredicted RBP20.16■□□□□ 0.82
PTCH1-227ENST00000553256 RNF43Q68DV7 783 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 ZC3H14Q6PJT7 736 aaKnown RBP20.16■□□□□ 0.82
PTCH1-227ENST00000553256 FMNL3Q8IVF7 1028 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 CPXM2Q8N436 756 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 RPLP0P6Q8NHW5 317 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 PLD4Q96BZ4 506 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 PIWIL1Q96J94 861 aaKnown RBP20.16■□□□□ 0.82
PTCH1-227ENST00000553256 SFMBT1Q9UHJ3 866 aa20.16■□□□□ 0.82
PTCH1-227ENST00000553256 LSM7Q9UK45 103 aaKnown RBP20.16■□□□□ 0.82
PTCH1-227ENST00000553256 HBS1LQ9Y450 684 aaKnown RBP20.16■□□□□ 0.82
PTCH1-227ENST00000553256 SLC12A8A0AV02 714 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 E5RJQ4 531 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 HRO43593 1189 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 HNRNPLP14866 589 aaKnown RBP eCLIP20.15■□□□□ 0.82
PTCH1-227ENST00000553256 CDH5P33151 784 aaPredicted RBP20.15■□□□□ 0.82
PTCH1-227ENST00000553256 GRIA2P42262 883 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 GOLGA8FQ08AF8 430 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 GOLGA8DPQ0D2H9 430 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 EXOC4Q96A65 974 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 CPXM1Q96SM3 734 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 BPIFA3Q9BQP9 254 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 DCLK3Q9C098 648 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 VPS16Q9H269 839 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 ZNF510Q9Y2H8 683 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 STARD13Q9Y3M8 1113 aa20.15■□□□□ 0.82
PTCH1-227ENST00000553256 CCDC163A0A0D9SF12 145 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.14■□□□□ 0.81
PTCH1-227ENST00000553256 MSI1O43347 362 aaKnown RBP20.14■□□□□ 0.81
PTCH1-227ENST00000553256 ATG13O75143 517 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 IGLV3-25P01717 112 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 LMNAP02545 664 aaKnown RBP20.14■□□□□ 0.81
PTCH1-227ENST00000553256 HMBSP08397 361 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 TYRP14679 529 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 TNFRSF4P43489 277 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 ACADSBP45954 432 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 FNTBP49356 437 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 COPB1P53618 953 aaKnown RBP20.14■□□□□ 0.81
PTCH1-227ENST00000553256 NRLP54845 237 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 JAM2P57087 298 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 EMC10Q5UCC4 262 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 WDR5BQ86VZ2 330 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 DHX40Q8IX18 779 aaKnown RBP20.14■□□□□ 0.81
PTCH1-227ENST00000553256 NAT16Q8N8M0 369 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 TERB1Q8NA31 727 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 IL17RCQ8NAC3 791 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 SLC39A13Q96H72 371 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 LSM14BQ9BX40 385 aaKnown RBP20.14■□□□□ 0.81
PTCH1-227ENST00000553256 STK33Q9BYT3 514 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 CD248Q9HCU0 757 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 ARHGEF4Q9NR80 690 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 WDR35Q9P2L0 1181 aa20.14■□□□□ 0.81
PTCH1-227ENST00000553256 F8VZ95 297 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 ADAM23O75077 832 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 CYP11B1P15538 503 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 MRPS21P82921 87 aaKnown RBP20.13■□□□□ 0.81
PTCH1-227ENST00000553256 PTK2Q05397 1052 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 TAF5Q15542 800 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 SYPL2Q5VXT5 272 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 TPGS1Q6ZTW0 290 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 RSRC2Q7L4I2 434 aaKnown RBP20.13■□□□□ 0.81
PTCH1-227ENST00000553256 LONP2Q86WA8 852 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 DENND1CQ8IV53 801 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 CAMKK1Q8N5S9 505 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 DQX1Q8TE96 717 aaKnown RBP20.13■□□□□ 0.81
PTCH1-227ENST00000553256 BBS2Q9BXC9 721 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 MIS12Q9H081 205 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 DEC1Q9P2X7 70 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 STRIP2Q9ULQ0 834 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 CLEC4EQ9ULY5 219 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 NAALADL1Q9UQQ1 740 aa20.13■□□□□ 0.81
PTCH1-227ENST00000553256 LGALS16A8MUM7 142 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 PRRT4C9JH25 899 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 NEDD8-MDP1E9PL57 170 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 LATS1O95835 1130 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 APODP05090 189 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 ATP1A3P13637 1013 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 USP8P40818 1118 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 KDSRQ06136 332 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 RING1Q06587 406 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 NNTQ13423 1086 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 DMC1Q14565 340 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 PPP2R5DQ14738 602 aa20.12■□□□□ 0.81
PTCH1-227ENST00000553256 KLHL40Q2TBA0 621 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms