RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 GOLGA8IPA6NC78 632 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 C2orf71A6NGG8 1288 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 GOLGA8JA6NMD2 632 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 LACTBL1A8MY62 500 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 PODXLO00592 558 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 C2CD2LO14523 706 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 TRAFD1O14545 582 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 OGTO15294 1046 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 GLP2RO95838 553 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 KRT13P13646 458 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 BRAFP15056 766 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CA8P35219 290 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 WNT7BP56706 349 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 SNRPFP62306 86 aaKnown RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 KCNH2Q12809 1159 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 COL19A1Q14993 1142 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 RCN1Q15293 331 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 DCAF17Q5H9S7 520 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 TCERG1LQ5VWI1 586 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 ZNF449Q6P9G9 518 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CD300LGQ6UXG3 332 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 LRRC74BQ6ZQY2 392 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 ADAT2Q7Z6V5 191 aaKnown RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 VPS36Q86VN1 386 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 SLC9A9Q8IVB4 645 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 RNF168Q8IYW5 571 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 STKLD1Q8NE28 680 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 SLC7A6OSQ96CW6 309 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 NR1H4Q96RI1 486 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 GANQ9H2C0 597 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 TMEM165Q9HC07 324 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 METTL14Q9HCE5 456 aaKnown RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 HSPBP1Q9NZL4 362 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CNTN3Q9P232 1028 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CPSF3Q9UKF6 684 aaKnown RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 ADAM28Q9UKQ2 775 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CHKBQ9Y259 395 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 ZNF510Q9Y2H8 683 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 SLC16A3O15427 465 aaKnown RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 MAP3K7O43318 606 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 HNRNPCL1O60812 293 aaKnown RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 PFDN1O60925 122 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 LILRB3O75022 631 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 TBX10O75333 385 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 B3GAT3O94766 335 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 TMCC1O94876 653 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 CTSAP10619 480 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 KCNE1P15382 129 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 CREB1P16220 341 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 ANXA13P27216 316 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 PTPN4P29074 926 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 RPL21P46778 160 aaKnown RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 SLC34A1Q06495 639 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 ADAM15Q13444 863 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 LSAMPQ13449 338 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 MYBPC2Q14324 1141 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 PDCD11Q14690 1871 aaKnown RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 UPP1Q16831 310 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 KHDC1Q4VXA5 237 aaKnown RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 FUT10Q6P4F1 479 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 PPP1R21Q6ZMI0 780 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 C4orf50Q6ZRC1 276 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 FAM47EQ6ZV65 393 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 TRMT10CQ7L0Y3 403 aaKnown RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 IRF2BP2Q7Z5L9 587 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 XXYLT1Q8NBI6 393 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 FEZF2Q8TBJ5 459 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 POMGNT1Q8WZA1 660 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 PABPC5Q96DU9 382 aaKnown RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 FAM84AQ96KN4 292 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 HAPLN3Q96S86 360 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 MIS12Q9H081 205 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 NGRNQ9NPE2 291 aaKnown RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 TUBGCP4Q9UGJ1 667 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 AGO2Q9UKV8 859 aaKnown RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 INTUQ9ULD6 942 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 STARD13Q9Y3M8 1113 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 ANK1P16157 1881 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 VWA8A3KMH1 1905 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 I3L4J1 428 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 DDX3YO15523 660 aaKnown RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 PHF2O75151 1096 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 TADA2AO75478 443 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 SOD2P04179 222 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 LYNP07948 512 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 UBTFL6P0CB48 400 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 CCDC166P0CW27 439 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 TAC1P20366 129 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 CHRNA3P32297 505 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 PTGIRP43119 386 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 USP46P62068 366 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 AP1B1Q10567 949 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 KCNC3Q14003 757 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 MAP7Q14244 749 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 ZBTB6Q15916 424 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 DUSP6Q16828 381 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 SPDYAQ5MJ70 313 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 SCARA3Q6AZY7 606 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 LLGL2Q6P1M3 1020 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms