RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ALOX15BO15296 676 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 MSI1O43347 362 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 GPR32O75388 356 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 AMHP03971 560 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 ERVK-10P10266 1014 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 PTPN1P18031 435 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 IL4RP24394 825 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 MGAT1P26572 445 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 PSMB4P28070 264 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 GCAP28676 217 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 CA8P35219 290 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 CXCR3P49682 368 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 FLT3LGP49771 235 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 GTF2A1P52655 376 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 GEMIN4P57678 1058 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 GJA9P57773 515 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 CAV1Q03135 178 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 TAP1Q03518 808 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 TUBB8Q3ZCM7 444 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 CDHR3Q6ZTQ4 885 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 SYDE1Q6ZW31 735 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 POLNQ7Z5Q5 900 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 FAM228AQ86W67 206 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 VPS52Q8N1B4 723 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 SPATA6LQ8N4H0 392 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 EIF1ADQ8N9N8 165 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 TTC13Q8NBP0 860 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 B3GALNT2Q8NCR0 500 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 ZC3H15Q8WU90 426 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 PTPRN2Q92932 1015 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 BHMTQ93088 406 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 PRR11Q96HE9 360 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 SNX27Q96L92 541 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 RILPQ96NA2 401 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 LHX5Q9H2C1 402 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 PRDM12Q9H4Q4 367 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 TRMT13Q9NUP7 481 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 PSMC3IPQ9P2W1 217 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 SFMBT1Q9UHJ3 866 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 RABGEF1Q9UJ41 708 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 HTTP42858 3142 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 SDK1Q7Z5N4 2213 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 COPEO14579 308 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 MFSD11O43934 449 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 UPP2O95045 317 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 JCHAINP01591 159 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 ITGAVP06756 1048 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 EPHB2P29323 1055 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 ATICP31939 592 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 TMPRSS15P98073 1019 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 CRHR2Q13324 411 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 TCEAL1Q15170 157 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 BOLA3Q53S33 107 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 PPM1JQ5JR12 505 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 GDF6Q6KF10 455 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 OLFML1Q6UWY5 402 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 MTDHQ86UE4 582 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 FUKQ8N0W3 1084 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 NDUFAF2Q8N183 169 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 EFCAB3Q8N7B9 438 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 COLGALT1Q8NBJ5 622 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 C3orf58Q8NDZ4 430 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 CMASQ8NFW8 434 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 RFWD2Q8NHY2 731 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 SLC35F5Q8WV83 523 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 KBTBD7Q8WVZ9 684 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 CKAP2Q8WWK9 683 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 KLC2Q9H0B6 622 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 FBXO6Q9NRD1 293 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 ABI2Q9NYB9 513 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 RLFQ13129 1914 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 RRN3P2A6NIE6 340 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 EEF2KO00418 725 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 BUD23O43709 281 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 DNAJC6O75061 913 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 ITGB1P05556 798 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 AVPR1AP37288 418 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 RPL10AP62906 217 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 HTRA3P83110 453 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 MXRA7P84157 204 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 BST2Q10589 180 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 GRB14Q14449 540 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 SETDB1Q15047 1291 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 PCSK7Q16549 785 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 FAM110CQ1W6H9 321 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 KIAA0319Q5VV43 1072 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 RSPH3Q86UC2 560 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 ECHDC2Q86YB7 292 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 NAT8LQ8N9F0 302 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 SMG8Q8ND04 991 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 HIPK4Q8NE63 616 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 OR52K1Q8NGK4 314 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 CXorf38Q8TB03 319 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 ZNF75CPQ92670 426 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 NKD2Q969F2 451 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 SGF29Q96ES7 293 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 CSPG4P5Q96PW8 444 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 CYTH2Q99418 400 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 ADAM2Q99965 735 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 SYT15Q9BQS2 421 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms