RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ATG4CQ96DT6 458 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 DCUN1D1Q96GG9 259 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 SORT1Q99523 831 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 IQCGQ9H095 443 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ST6GALNAC4Q9H4F1 302 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 RPAP3Q9H6T3 665 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 XAB2Q9HCS7 855 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 DNAJB4Q9UDY4 337 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF232Q9UNY5 417 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 IKBKGQ9Y6K9 419 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 CROCCQ5TZA2 2017 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 YDJCA8MPS7 323 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 K7ERI5 159 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF195O14628 629 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 RGL2O15211 777 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 DCXO43602 365 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 FKBP6O75344 327 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 TMCC1O94876 653 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 IL1BP01584 269 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 AMHP03971 560 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 BPGMP07738 259 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 KDELR1P24390 212 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 L1CAMP32004 1257 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 TCF7P36402 384 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 CAP2P40123 477 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 IDH3AP50213 366 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ADARP55265 1226 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 EIF3EP60228 445 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 IGBP1P78318 339 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 MRPS22P82650 360 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 TFAMQ00059 246 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 STX3Q13277 289 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 TRPC3Q13507 836 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 KCNJ11Q14654 390 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 GPAT2Q6NUI2 795 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 DNAJC24Q6P3W2 148 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 RSBN1LQ6PCB5 846 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 B3GNT6Q6ZMB0 384 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PTAR1Q7Z6K3 402 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ADGRG6Q86SQ4 1221 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 SLC26A11Q86WA9 606 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 HACE1Q8IYU2 909 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF513Q8N8E2 541 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 NETO2Q8NC67 525 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 FAM156AQ8NDB6 213 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 MAPK15Q8TD08 544 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PRPF31Q8WWY3 499 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ATP6V0A1Q93050 837 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 TRIM11Q96F44 468 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 WRNIP1Q96S55 665 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PEBP4Q96S96 227 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 RIT2Q99578 217 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 CALN1Q9BXU9 219 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 C1orf21Q9H246 121 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 C17orf75Q9HAS0 396 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 POPDC2Q9HBU9 364 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 AGO4Q9HCK5 861 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 INIPQ9NRY2 104 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PTTG2Q9NZH5 202 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ARHGAP28Q9P2N2 729 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 MAD1L1Q9Y6D9 718 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 BRCA2P51587 3418 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 E9PBE3 544 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ADCY3O60266 1144 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 KLHL41O60662 606 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 SUPT3HO75486 399 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 TRPA1O75762 1119 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 FGF3P11487 239 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PTPN1P18031 435 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 NCF2P19878 526 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 RGS2P41220 211 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 DPP6P42658 865 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 CCR10P46092 362 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 RPL5P46777 297 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 COPAP53621 1224 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 MS4A2Q01362 244 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 CTBSQ01459 385 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PTPN20Q4JDL3 420 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 FASTKD1Q53R41 847 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 OGFRL1Q5TC84 451 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 C6orf163Q5TEZ5 329 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 TTC39BQ5VTQ0 682 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 MBLAC2Q68D91 279 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 UNC5AQ6ZN44 842 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 TRIM67Q6ZTA4 783 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF677Q86XU0 584 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 CRLF3Q8IUI8 442 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 THNSL1Q8IYQ7 743 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 KCTD17Q8N5Z5 321 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ACTRT2Q8TDY3 377 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 SLC7A3Q8WY07 619 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ERLEC1Q96DZ1 483 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PIWIL1Q96J94 861 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 MRPL1Q9BYD6 325 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PDGFDQ9GZP0 370 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 RNPEPQ9H4A4 650 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 RAB6BQ9NRW1 208 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 SLC9A2Q9UBY0 812 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PSAT1Q9Y617 370 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 AP4B1Q9Y6B7 739 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms