RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 CCL16O15467 120 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 PSTPIP1O43586 416 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 GRAP2O75791 330 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 LATS1O95835 1130 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 COMTP21964 271 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 PSMA2P25787 234 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 GABRR2P28476 465 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 GBP1P32455 592 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 CTNNA1P35221 906 aaKnown RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 RDXP35241 583 aaKnown RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 CCR2P41597 374 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 ZNF135P52742 658 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 RNASE9P60153 205 aaKnown RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 COG7P83436 770 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 NRG1Q02297 640 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 MESDQ14696 234 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 TRIP4Q15650 581 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 TAF12Q16514 161 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 HADHQ16836 314 aaKnown RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 BOLA3Q53S33 107 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 CC2D1AQ6P1N0 951 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 PHLDB2Q86SQ0 1253 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 DAAM2Q86T65 1068 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 HS6ST3Q8IZP7 471 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 SMRP1Q8NCR6 262 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 SHKBP1Q8TBC3 707 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 RNF139Q8WU17 664 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 SUSD6Q92537 303 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 MRPS31Q92665 395 aaKnown RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 BTBD6Q96KE9 485 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 ZFRQ96KR1 1074 aaKnown RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 C1orf74Q96LT6 269 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 HAPLN3Q96S86 360 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 KLF16Q9BXK1 252 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 TLR10Q9BXR5 811 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 RNF38Q9H0F5 515 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 TASP1Q9H6P5 420 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 MTMR10Q9NXD2 777 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 DNMT3LQ9UJW3 386 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 STOML2Q9UJZ1 356 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 AMFRQ9UKV5 643 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 MAGED2Q9UNF1 606 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-211ENST00000552338 M0QYT0 321 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 FANCGO15287 622 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 DDX3YO15523 660 aaKnown RBP9.97□□□□□ -0.81
LIMA1-211ENST00000552338 LINC01565O15544 149 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 COCHO43405 550 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 GREM1O60565 184 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 TBX10O75333 385 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 KRT7P08729 469 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 SLC2A3P11169 496 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 TFE3P19532 575 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-211ENST00000552338 MIPP30301 263 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 ARSEP51690 589 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 PITX1P78337 314 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-211ENST00000552338 RBM10P98175 930 aaKnown RBP9.97□□□□□ -0.81
LIMA1-211ENST00000552338 TAZQ16635 292 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 SLC5A9Q2M3M2 681 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 C15orf59Q2T9L4 293 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-211ENST00000552338 ZNF569Q5MCW4 686 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 ARTNQ5T4W7 220 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 SH3PXD2AQ5TCZ1 1133 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 PDZD4Q76G19 769 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-211ENST00000552338 TAC4Q86UU9 113 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 RHOT1Q8IXI2 618 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 SLC35F6Q8N357 371 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 C17orf53Q8N3J3 647 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-211ENST00000552338 FAM172AQ8WUF8 416 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 SMG7Q92540 1137 aaKnown RBP9.97□□□□□ -0.81
LIMA1-211ENST00000552338 EDEM1Q92611 657 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 FCRL2Q96LA5 508 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-211ENST00000552338 GUCD1Q96NT3 240 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 CDX2Q99626 313 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-211ENST00000552338 CORO1BQ9BR76 489 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 SLC46A2Q9BY10 475 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 OSBPL2Q9H1P3 480 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 RETREG1Q9H6L5 497 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 PRDM16Q9HAZ2 1276 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 TRPV4Q9HBA0 871 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 PIGVQ9NUD9 493 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 HCFC1R1Q9NWW0 138 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 OBP2AQ9NY56 170 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 FZD10Q9ULW2 581 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 USP18Q9UMW8 372 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 EFR3BQ9Y2G0 817 aa9.97□□□□□ -0.81
LIMA1-211ENST00000552338 ZFP37Q9Y6Q3 630 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-211ENST00000552338 C2orf78A6NCI8 922 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 GFRA2O00451 464 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 NRG2O14511 850 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-211ENST00000552338 HDCP19113 662 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 IL1R2P27930 398 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 CCR1P32246 355 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 HTR7P34969 479 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 PTPN7P35236 360 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 ADRA1BP35368 520 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 MTHFRP42898 656 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 HCAR3P49019 387 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 SULT1E1P49888 294 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 NAP1L1P55209 391 aaKnown RBP9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms