RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PPME1Q9Y570 386 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 SMIM24O75264 130 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 YBX3P16989 372 aaKnown RBP eCLIP15.47■□□□□ 0.075e-6■■■□□ 19.1
CUX1-214ENST00000550008 LHX1P48742 406 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 EFTUD2Q15029 972 aaKnown RBP eCLIP15.47■□□□□ 0.07
CUX1-214ENST00000550008 TMTC4Q5T4D3 741 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 SDHAF4Q5VUM1 108 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 DEFB128Q7Z7B8 93 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 LCA5Q86VQ0 697 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 RNF157Q96PX1 679 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 NT5MQ9NPB1 228 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 CACNG4Q9UBN1 327 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 A0A1W2PPM1 405 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 SLC12A8A0AV02 714 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 CSE1LP55060 971 aaKnown RBP15.46■□□□□ 0.07
CUX1-214ENST00000550008 BBS12Q6ZW61 710 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 IFNEQ86WN2 208 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 GCNAQ96QF7 691 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 TBCBQ99426 244 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 FICDQ9BVA6 458 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 OSBPL1AQ9BXW6 950 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 TMEM51Q9NW97 253 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.46■□□□□ 0.07
CUX1-214ENST00000550008 PRKAG2Q9UGJ0 569 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 PKD1L3Q7Z443 1732 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.46■□□□□ 0.07
CUX1-214ENST00000550008 DNAJB2P25686 324 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 TAF2Q6P1X5 1199 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 MTBPQ96DY7 904 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 SRPK1Q96SB4 655 aaKnown RBP15.46■□□□□ 0.07
CUX1-214ENST00000550008 TKTL2Q9H0I9 626 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 HMGXB4Q9UGU5 601 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 DNAJC16Q9Y2G8 782 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 TTLL13PA6NNM8 815 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 FZD9O00144 591 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 SREBF2Q12772 1141 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 HIC1Q14526 733 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 ANKRD20A8PQ5CZ79 823 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 TMCO4Q5TGY1 634 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 EIF1ADQ8N9N8 165 aaKnown RBP15.46■□□□□ 0.07
CUX1-214ENST00000550008 B3GALNT2Q8NCR0 500 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 PDZD8Q8NEN9 1154 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 FGD4Q96M96 766 aa15.46■□□□□ 0.07
CUX1-214ENST00000550008 MTG1Q9BT17 334 aaPredicted RBP15.46■□□□□ 0.07
CUX1-214ENST00000550008 IRS2Q9Y4H2 1338 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 EDIL3O43854 480 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 B4GALT4O60513 344 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 F9P00740 461 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 RECQLP46063 649 aaPredicted RBP15.45■□□□□ 0.06
CUX1-214ENST00000550008 POLE2P56282 527 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 SH3PXD2AQ5TCZ1 1133 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 TXNRD3NBQ6F5E7 133 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 KIRREL3Q8IZU9 778 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 FRMD8Q9BZ67 464 aaPredicted RBP15.45■□□□□ 0.06
CUX1-214ENST00000550008 PRDM12Q9H4Q4 367 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 SCOCQ9UIL1 159 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 TRIM33Q9UPN9 1127 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 MTO1Q9Y2Z2 717 aaKnown RBP15.45■□□□□ 0.06
CUX1-214ENST00000550008 ERVK-10P10266 1014 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 SERPINB4P48594 390 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 UGP2Q16851 508 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 FRMD8P1Q9BZ68 369 aaPredicted RBP15.45■□□□□ 0.06
CUX1-214ENST00000550008 LRRC40Q9H9A6 602 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 NDE1Q9NXR1 346 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 VANGL2Q9ULK5 521 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 COQ4Q9Y3A0 265 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 NVLO15381 856 aaKnown RBP15.45■□□□□ 0.06
CUX1-214ENST00000550008 LTFP02788 710 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 NQO1P15559 274 aaKnown RBP15.45■□□□□ 0.06
CUX1-214ENST00000550008 PSMB4P28070 264 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 ITGA9Q13797 1035 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 AGGF1Q8N302 714 aaeCLIP15.45■□□□□ 0.062e-7■■■■■ 57.8
CUX1-214ENST00000550008 PDZD7Q9H5P4 517 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 SMPD4Q9NXE4 827 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 SUN2Q9UH99 717 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 PCDHB7Q9Y5E2 793 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 MPP3Q13368 585 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 SLC10A6Q3KNW5 377 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 DUSP28Q4G0W2 176 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 LRRC38Q5VT99 294 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 PMF1Q6P1K2 205 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 PACS2Q86VP3 889 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 LRRC43Q8N309 656 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 TMEM120AQ9BXJ8 343 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 ST3GAL5Q9UNP4 418 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 C2CD2Q9Y426 696 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 L3MBTL1Q9Y468 752 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 NR2E3Q9Y5X4 410 aa15.45■□□□□ 0.06
CUX1-214ENST00000550008 CASQ2O14958 399 aaPredicted RBP15.44■□□□□ 0.06
CUX1-214ENST00000550008 CD52P31358 61 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 ICAM3P32942 547 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 BRCC3P46736 316 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 NOVP48745 357 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 PDAP1Q13442 181 aaKnown RBP15.44■□□□□ 0.06
CUX1-214ENST00000550008 MAPRE1Q15691 268 aaKnown RBP15.44■□□□□ 0.06
CUX1-214ENST00000550008 RNF219Q5W0B1 726 aaPredicted RBP15.44■□□□□ 0.06
CUX1-214ENST00000550008 TSHZ1Q6ZSZ6 1077 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 NSL1Q96IY1 281 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 Q9H521 79 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 STARD7Q9NQZ5 370 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms