RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 GOT1P17174 413 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 TMEM259Q4ZIN3 620 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 POLNQ7Z5Q5 900 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 PIK3R5Q8WYR1 880 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 ZNF512Q96ME7 567 aaPredicted RBP16.16■□□□□ 0.18
CUX1-211ENST00000546411 MAGEB5Q9BZ81 275 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 SLC17A7Q9P2U7 560 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 MYH15Q9Y2K3 1946 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 FAM237BA0A1B0GVD1 139 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 NAPEPLDQ6IQ20 393 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 TRABD2AQ86V40 505 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 GLIS1Q8NBF1 620 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 BORCS6Q96GS4 357 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 UBXN6Q9BZV1 441 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 UPF3AQ9H1J1 476 aaKnown RBP16.15■□□□□ 0.18
CUX1-211ENST00000546411 ETNK2Q9NVF9 386 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 IL1RAPL1Q9NZN1 696 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 TMEM59LQ9UK28 342 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 DRG1Q9Y295 367 aaKnown RBP16.15■□□□□ 0.18
CUX1-211ENST00000546411 NR2E3Q9Y5X4 410 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 MYH14Q7Z406 1995 aaKnown RBP16.15■□□□□ 0.18
CUX1-211ENST00000546411 TM9SF1O15321 606 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 NOVP48745 357 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 GMLQ99445 158 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 DLGAP2Q9P1A6 1054 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.15■□□□□ 0.18
CUX1-211ENST00000546411 TCRBV9S1A1TA0A576 114 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 MEI4A8MW99 385 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 ITGAVP06756 1048 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 RALBP11234 206 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 C10orf120Q5SQS8 335 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 CHSY1Q86X52 802 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 RNF148Q8N7C7 305 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 AGAP11Q8TF27 550 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 TBCBQ99426 244 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 FBXO6Q9NRD1 293 aaPredicted RBP16.15■□□□□ 0.18
CUX1-211ENST00000546411 SPATS2LQ9NUQ6 558 aaKnown RBP16.15■□□□□ 0.18
CUX1-211ENST00000546411 SLC4A7Q9Y6M7 1214 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 MYO5AQ9Y4I1 1855 aaKnown RBP16.15■□□□□ 0.18
CUX1-211ENST00000546411 E5RI56 91 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 ENDOD1O94919 500 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 KLC1Q07866 573 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 ANO4Q32M45 955 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.15■□□□□ 0.18
CUX1-211ENST00000546411 GALNT4Q8N4A0 578 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 APOPT1Q96IL0 206 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 LRRC40Q9H9A6 602 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 VTA1Q9NP79 307 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 DONSONQ9NYP3 566 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 TUBGCP4Q9UGJ1 667 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 VANGL2Q9ULK5 521 aa16.15■□□□□ 0.18
CUX1-211ENST00000546411 MYH7P12883 1935 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 ONECUT3O60422 494 aaPredicted RBP16.14■□□□□ 0.17
CUX1-211ENST00000546411 GLRA3O75311 464 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 SETSIPP0DME0 302 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 PSMB4P28070 264 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 CDKN2BP42772 138 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 NUDT2P50583 147 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 GBE1Q04446 702 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 MPP3Q13368 585 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 MAP7Q14244 749 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 SLC1A5Q15758 541 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 DNAL1Q4LDG9 190 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 CXCL17Q6UXB2 119 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 PLPPR4Q7Z2D5 763 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 CNPY4Q8N129 248 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 LMO3Q8TAP4 145 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 BLOC1S5Q8TDH9 187 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 RPRD1AQ96P16 312 aaPredicted RBP16.14■□□□□ 0.17
CUX1-211ENST00000546411 BEGAINQ9BUH8 593 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 HMGXB4Q9UGU5 601 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 MYH3P11055 1940 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 CNTNAP2Q9UHC6 1331 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 LAMA4Q16363 1823 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 C2orf71A6NGG8 1288 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 KIF3CO14782 793 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 SNX2O60749 519 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 CHEK2O96017 543 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 BDNFP23560 247 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 LRRC8EQ6NSJ5 796 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 FIZ1Q96SL8 496 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 LPIN3Q9BQK8 851 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 TINF2Q9BSI4 451 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 PRDM12Q9H4Q4 367 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 AFF4Q9UHB7 1163 aaKnown RBP16.14■□□□□ 0.17
CUX1-211ENST00000546411 PKD1L3Q7Z443 1732 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 TTLL13PA6NNM8 815 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 GNGT2O14610 69 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 CPA3P15088 417 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 EEF1B2P24534 225 aaKnown RBP16.14■□□□□ 0.17
CUX1-211ENST00000546411 COPAP53621 1224 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 MFSD10Q14728 455 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 TMEM154Q6P9G4 183 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.14■□□□□ 0.171e-12■■■□□ 16.9
CUX1-211ENST00000546411 LPPQ93052 612 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 LENG1Q96BZ8 264 aaPredicted RBP16.14■□□□□ 0.17
CUX1-211ENST00000546411 SUN2Q9UH99 717 aa16.14■□□□□ 0.17
CUX1-211ENST00000546411 PTPRJQ12913 1337 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 IRS2Q9Y4H2 1338 aa16.13■□□□□ 0.17
CUX1-211ENST00000546411 RNF103-CHMP3A0A140T963 221 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms