RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 INTS8Q75QN2 995 aaKnown RBP8.92□□□□□ -0.98
USP28-215ENST00000545608 LPCAT2Q7L5N7 544 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 SCD5Q86SK9 330 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 FAM186BQ8IYM0 893 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 ZNF513Q8N8E2 541 aaPredicted RBP8.92□□□□□ -0.98
USP28-215ENST00000545608 SEMA4DQ92854 862 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 P2RY11Q96G91 374 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 ACOX2Q99424 681 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 BBS2Q9BXC9 721 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 GOLPH3LQ9H4A5 285 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 CYP3A43Q9HB55 503 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 TMEM74BQ9NUR3 256 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 DNAJC17Q9NVM6 304 aaKnown RBP8.92□□□□□ -0.98
USP28-215ENST00000545608 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP28-215ENST00000545608 ANGPTL2Q9UKU9 493 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 STARD13Q9Y3M8 1113 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 PCDHB3Q9Y5E6 796 aa8.92□□□□□ -0.98
USP28-215ENST00000545608 KIAA1549LQ6ZVL6 1849 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 FRYLO94915 3013 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 EPG5Q9HCE0 2579 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 A0A1W2PQF6 199 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 PRRT4C9JH25 899 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 NEDD8-MDP1E9PL57 170 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 CACNG3O60359 315 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 KIF20AO95235 890 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 CISD3P0C7P0 127 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 KRT13P13646 458 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 HOXB2P14652 356 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 TYRP14679 529 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 NTSR1P30989 418 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 PSMC2P35998 433 aaKnown RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 PLA2G4AP47712 749 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 NOVA1P51513 510 aaKnown RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 MCCD1P59942 119 aaPredicted RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 SHC2P98077 582 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 BYSLQ13895 437 aaKnown RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 PREPLQ4J6C6 727 aaPredicted RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 ZCWPW2Q504Y3 356 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 ZNF394Q53GI3 561 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 TRIM61Q5EBN2 209 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 PPP1R26Q5T8A7 1209 aaPredicted RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 DAB2IPQ5VWQ8 1189 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 GRAMD4Q6IC98 578 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 KIAA1211LQ6NV74 962 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 KLHDC10Q6PID8 442 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 BLOC1S3Q6QNY0 202 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 Q6ZNB5 142 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 TRMT11Q7Z4G4 463 aaKnown RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 SCUBE3Q8IX30 993 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 GUF1Q8N442 669 aaKnown RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 DEFB119Q8N690 84 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 CCDC47Q96A33 483 aaKnown RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 ERLEC1Q96DZ1 483 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 EEF2KMTQ96G04 330 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 SPACA7Q96KW9 195 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 XPO6Q96QU8 1125 aaKnown RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 DUSP16Q9BY84 665 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 IMPG2Q9BZV3 1241 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 NIF3L1Q9GZT8 377 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 TMEM8AQ9HCN3 771 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 CD248Q9HCU0 757 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 PNPLA8Q9NP80 782 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 TMEM9BQ9NQ34 198 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 MARK1Q9P0L2 795 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 WDR35Q9P2L0 1181 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 EVLQ9UI08 416 aaPredicted RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 DNMT3LQ9UJW3 386 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 NAGPAQ9UK23 515 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 LSM7Q9UK45 103 aaKnown RBP8.91□□□□□ -0.98
USP28-215ENST00000545608 PCDHA5Q9Y5H7 936 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 USP3Q9Y6I4 520 aa8.91□□□□□ -0.98
USP28-215ENST00000545608 ATXN2Q99700 1313 aaKnown RBP8.9□□□□□ -0.98
USP28-215ENST00000545608 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.9□□□□□ -0.98
USP28-215ENST00000545608 A0A1W2PQ27 194 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 A0A1W2PQ64 194 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 A0A1W2PQD8 194 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 STC2O76061 302 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 ZNF202O95125 648 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 KLKB1P03952 638 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 ITPKAP23677 461 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 RPL13P26373 211 aaKnown RBP8.9□□□□□ -0.98
USP28-215ENST00000545608 ENPEPQ07075 957 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 UAP1L1Q3KQV9 507 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 C10orf120Q5SQS8 335 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 SH3PXD2AQ5TCZ1 1133 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 LYSMD4Q5XG99 296 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 KRT39Q6A163 491 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 CCDC186Q7Z3E2 898 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 SYT12Q8IV01 421 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 SMYD4Q8IYR2 804 aaPredicted RBP8.9□□□□□ -0.98
USP28-215ENST00000545608 CHPFQ8IZ52 775 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 ZNF276Q8N554 614 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 IPO4Q8TEX9 1081 aaKnown RBP8.9□□□□□ -0.98
USP28-215ENST00000545608 BHMTQ93088 406 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 HEXIM2Q96MH2 286 aaKnown RBP8.9□□□□□ -0.98
USP28-215ENST00000545608 FSCN3Q9NQT6 498 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 PLK2Q9NYY3 685 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 CALCOCO1Q9P1Z2 691 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 FBXO10Q9UK96 956 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 PILRBQ9UKJ0 227 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms