RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 PENKP01210 267 aaPredicted RBP13.53□□□□□ -0.24
USP28-212ENST00000544750 ATP5C1P36542 298 aaKnown RBP13.53□□□□□ -0.24
USP28-212ENST00000544750 STAT6P42226 847 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 COPAP53621 1224 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 CYP4F3Q08477 520 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 PKP1Q13835 747 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 PTPRNQ16849 979 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 KLHDC10Q6PID8 442 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 IL27RAQ6UWB1 636 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 STXBP4Q6ZWJ1 553 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 GPRIN1Q7Z2K8 1008 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 TMPRSS6Q8IU80 811 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 CRYBG2Q8N1P7 616 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 PLEKHO2Q8TD55 490 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 SYAP1Q96A49 352 aaPredicted RBP13.53□□□□□ -0.24
USP28-212ENST00000544750 CCDC127Q96BQ5 260 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 TNIP3Q96KP6 325 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 CDC6Q99741 560 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 MED10Q9BTT4 135 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 NACA2Q9H009 215 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 FBXO44Q9H4M3 255 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 NMUR1Q9HB89 426 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.53□□□□□ -0.24
USP28-212ENST00000544750 TLR8Q9NR97 1041 aaKnown RBP13.53□□□□□ -0.24
USP28-212ENST00000544750 PLK2Q9NYY3 685 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 EIF2B4Q9UI10 523 aaKnown RBP13.53□□□□□ -0.24
USP28-212ENST00000544750 BTBD3Q9Y2F9 522 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 SLCO1B1Q9Y6L6 691 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 NPC1O15118 1278 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 CLIC2O15247 247 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 CCDC130P13994 396 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 OXTRP30559 389 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 MFAP3P55082 362 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 EHHADHQ08426 723 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 TRPC3Q13507 836 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 STARD3Q14849 445 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 E2F4Q16254 413 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 GEN1Q17RS7 908 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 BMT2Q1RMZ1 405 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 FYB2Q5VWT5 728 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 ACOT1Q86TX2 421 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 ZNF276Q8N554 614 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 XXYLT1Q8NBI6 393 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 RHBDD1Q8TEB9 315 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 USP28Q96RU2 1077 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 MIR1-1HGQ9H1L0 117 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 ZSCAN16Q9H4T2 348 aaPredicted RBP13.52□□□□□ -0.25
USP28-212ENST00000544750 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.52□□□□□ -0.25
USP28-212ENST00000544750 KBTBD4Q9NVX7 518 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 LSM7Q9UK45 103 aaKnown RBP13.52□□□□□ -0.25
USP28-212ENST00000544750 SCML2Q9UQR0 700 aa13.52□□□□□ -0.25
USP28-212ENST00000544750 ARID1BQ8NFD5 2236 aaPredicted RBP13.52□□□□□ -0.25
USP28-212ENST00000544750 A0A1B0GVT2 93 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 MDM4O15151 490 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 CYP26A1O43174 497 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 STC2O76061 302 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 VNN1O95497 513 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 KLKB1P03952 638 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 PLA2G4AP47712 749 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 CASP4P49662 377 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 CSNK1EP49674 416 aaKnown RBP13.51□□□□□ -0.25
USP28-212ENST00000544750 CYP2J2P51589 502 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 MAP3K7CLP57077 242 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 SNRPFP62306 86 aaKnown RBP13.51□□□□□ -0.25
USP28-212ENST00000544750 CLDN10P78369 228 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 SMAD1Q15797 465 aaKnown RBP13.51□□□□□ -0.25
USP28-212ENST00000544750 ZNF667Q5HYK9 610 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 CNNM4Q6P4Q7 775 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 CLEC20AQ6ZU45 233 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 C12orf56Q8IXR9 622 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 GALNT15Q8N3T1 639 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 SPRYD3Q8NCJ5 442 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 SLC2A14Q8TDB8 520 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 BHMTQ93088 406 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 ELMO3Q96BJ8 720 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 SIPA1Q96FS4 1042 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 PIWIL1Q96J94 861 aaKnown RBP13.51□□□□□ -0.25
USP28-212ENST00000544750 NUP58Q9BVL2 599 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 PCED1AQ9H1Q7 454 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 TNMDQ9H2S6 317 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 HMGXB4Q9UGU5 601 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 NUDT5Q9UKK9 219 aa13.51□□□□□ -0.25
USP28-212ENST00000544750 CFAP46Q8IYW2 2715 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 UBE4BO95155 1302 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 C1QL1O75973 258 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 C4BPAP04003 597 aaKnown RBP13.5□□□□□ -0.25
USP28-212ENST00000544750 RARGP13631 454 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 NASPP49321 788 aaPredicted RBP13.5□□□□□ -0.25
USP28-212ENST00000544750 GOLGA8FQ08AF8 430 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 GOLGA8DPQ0D2H9 430 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 ZNF234Q14588 700 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 SLC39A14Q15043 492 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 KIF19Q2TAC6 998 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 ZNF699Q32M78 642 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 PDILTQ8N807 584 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 PDCD7Q8N8D1 485 aaKnown RBP13.5□□□□□ -0.25
USP28-212ENST00000544750 C12orf29Q8N999 325 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 PARD3BQ8TEW8 1205 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 OSGEPQ9NPF4 335 aa13.5□□□□□ -0.25
USP28-212ENST00000544750 CLEC4EQ9ULY5 219 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms