RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TOR4AQ9NXH8 423 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 MTMR6Q9Y217 621 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 APOBEC2Q9Y235 224 aaKnown RBP18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 CABIN1Q9Y6J0 2220 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 KNL1Q8NG31 2342 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 GOLGA4Q13439 2230 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 A0A1W2PQH9 124 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 MEI4A8MW99 385 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 EXOC3O60645 756 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 IL12RB1P42701 662 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 TPMTP51580 245 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 AMPD3Q01432 767 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 GOLGA8FQ08AF8 430 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 GOLGA8DPQ0D2H9 430 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 KLHDC10Q6PID8 442 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 UNC13DQ70J99 1090 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 CADM4Q8NFZ8 388 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 GAREM1Q9H706 876 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 SLC39A2Q9NP94 309 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 KIAA1522Q9P206 1035 aaPredicted RBP18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 CGNQ9P2M7 1197 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 THAP10Q9P2Z0 257 aaPredicted RBP18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 SLC27A6Q9Y2P4 619 aa18.77■□□□□ 0.6
CLSTN3-214ENST00000542663 NYNRINQ9P2P1 1898 aaKnown RBP18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 STC2O76061 302 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 CLSTN1O94985 981 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 PENKP01210 267 aaPredicted RBP18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 KLKB1P03952 638 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 ZNF883P0CG24 379 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 ADORA2BP29275 332 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 AP3M2P53677 418 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 MFAP3P55082 362 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 DLG4P78352 724 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 STK38Q15208 465 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 GEN1Q17RS7 908 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 KNOP1Q1ED39 458 aaKnown RBP18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 DCAF12L1Q5VU92 463 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 FYB2Q5VWT5 728 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 DBX2Q6ZNG2 339 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 SPRYD3Q8NCJ5 442 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 C1orf216Q8TAB5 229 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 JAKMIP2Q96AA8 810 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 BLZF1Q9H2G9 400 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 TM7SF3Q9NS93 570 aa18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 TFIP11Q9UBB9 837 aaKnown RBP18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 FNDC3AQ9Y2H6 1198 aaKnown RBP18.76■□□□□ 0.59
CLSTN3-214ENST00000542663 MYLKQ15746 1914 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 CILPO75339 1184 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 DKK1O94907 266 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 FAM200BP0CF97 657 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 RARGP13631 454 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 ASPAP45381 313 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 PLA2G4AP47712 749 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 COPAP53621 1224 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 STARD3Q14849 445 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 SPOPLQ6IQ16 392 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 SHC4Q6S5L8 630 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 UNC93AQ86WB7 457 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 IQUBQ8NA54 791 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 SETD7Q8WTS6 366 aaKnown RBP18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 BBC3Q96PG8 261 aaPredicted RBP18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 TWNKQ96RR1 684 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 HNRNPABQ99729 332 aaKnown RBP18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 MIR1-1HGQ9H1L0 117 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 DNMT3LQ9UJW3 386 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 RAXQ9Y2V3 346 aa18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 URB1O60287 2271 aaKnown RBP18.75■□□□□ 0.59
CLSTN3-214ENST00000542663 METTL12A8MUP2 240 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 SPTLC2O15270 562 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 BCAT2O15382 392 aaPredicted RBP18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 PPP6R2O75170 966 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 IGLV3-19P01714 112 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 MATKP42679 507 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 ZNF132P52740 706 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 SGSM1Q2NKQ1 1148 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 HLA-BQ31612 363 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 ZACNQ401N2 412 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 C10orf120Q5SQS8 335 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 TMPRSS7Q7RTY8 843 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 SCD5Q86SK9 330 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 TMPRSS6Q8IU80 811 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 RBBP8NLQ8NC74 664 aaPredicted RBP18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 HNRNPLLQ8WVV9 542 aaKnown RBP18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 PIWIL1Q96J94 861 aaKnown RBP18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 DMAC2Q9NW81 257 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 EIF2B4Q9UI10 523 aaKnown RBP18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 PCDHA5Q9Y5H7 936 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 SLCO1B1Q9Y6L6 691 aa18.74■□□□□ 0.59
CLSTN3-214ENST00000542663 NPC1O15118 1278 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 CER1O95813 267 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 ASS1P00966 412 aaKnown RBP18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 ATXN1LP0C7T5 689 aaKnown RBP18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 KIF11P52732 1056 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 ZNF234Q14588 700 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 MARCH9Q86YJ5 346 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 ZNF276Q8N554 614 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 CYFIP2Q96F07 1278 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 SIPA1Q96FS4 1042 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 ZSCAN16Q9H4T2 348 aaPredicted RBP18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 UPF2Q9HAU5 1272 aaKnown RBP18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms