RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 TMC2Q8TDI7 906 aa16.28■□□□□ 0.2
CLSTN3-213ENST00000541953 ZNF419Q96HQ0 510 aaPredicted RBP16.28■□□□□ 0.2
CLSTN3-213ENST00000541953 XPO6Q96QU8 1125 aaKnown RBP16.28■□□□□ 0.2
CLSTN3-213ENST00000541953 SLC32A1Q9H598 525 aa16.28■□□□□ 0.2
CLSTN3-213ENST00000541953 EXOC1Q9NV70 894 aa16.28■□□□□ 0.2
CLSTN3-213ENST00000541953 FAM13BQ9NYF5 915 aa16.28■□□□□ 0.2
CLSTN3-213ENST00000541953 NAGPAQ9UK23 515 aa16.28■□□□□ 0.2
CLSTN3-213ENST00000541953 FBXO10Q9UK96 956 aa16.28■□□□□ 0.2
CLSTN3-213ENST00000541953 SLCO1B1Q9Y6L6 691 aa16.28■□□□□ 0.2
CLSTN3-213ENST00000541953 STON1Q9Y6Q2 735 aa16.28■□□□□ 0.2
CLSTN3-213ENST00000541953 A0A1B0GVL5 298 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 PDXKO00764 312 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 SH3BP5O60239 455 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 OPHN1O60890 802 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 CILPO75339 1184 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 RPN1P04843 607 aaKnown RBP16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 CENPBP07199 599 aaPredicted RBP16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 PFKFB1P16118 471 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 ATXN3P54252 364 aaPredicted RBP16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 MFAP3P55082 362 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 CEP57L1Q8IYX8 460 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 HDDC3Q8N4P3 179 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 RBBP8NLQ8NC74 664 aaPredicted RBP16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 CEP76Q8TAP6 659 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 SORCS1Q8WY21 1168 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 TAF4BQ92750 862 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 MMRN2Q9H8L6 949 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 DNAAF2Q9NVR5 837 aaKnown RBP16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 WDR35Q9P2L0 1181 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 DNMT3LQ9UJW3 386 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 LSM7Q9UK45 103 aaKnown RBP16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 MAPK8IP1Q9UQF2 711 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 MSRB2Q9Y3D2 182 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 USP3Q9Y6I4 520 aa16.27■□□□□ 0.2
CLSTN3-213ENST00000541953 A0A1W2PQD8 194 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 PENKP01210 267 aaPredicted RBP16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 PDIA4P13667 645 aaKnown RBP16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 P4HA1P13674 534 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 VAMP7P51809 220 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 BNC1Q01954 994 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 GRIK2Q13002 908 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 NUMA1Q14980 2115 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 PLEKHG6Q3KR16 790 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 ZNF394Q53GI3 561 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 TMEM215Q68D42 235 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 KLHDC10Q6PID8 442 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 RAB44Q7Z6P3 723 aaPredicted RBP16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 RGL4Q8IZJ4 473 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 PNPLA1Q8N8W4 532 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 NDRG1Q92597 394 aaKnown RBP16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 SEMA4DQ92854 862 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 TOE1Q96GM8 510 aaKnown RBP16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 ARID3AQ99856 593 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 NT5C1AQ9BXI3 368 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 IL21RQ9HBE5 538 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 RASAL2Q9UJF2 1139 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 RCOR1Q9UKL0 485 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 PCDHA5Q9Y5H7 936 aa16.26■□□□□ 0.19
CLSTN3-213ENST00000541953 TMEM8BA6NDV4 472 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 TULP2O00295 520 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 IKBKBO14920 756 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 ZNF217O75362 1048 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 KIF20AO95235 890 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 PRKCHP24723 683 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 CORO1AP31146 461 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 DPP6P42658 865 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 PLA2G4AP47712 749 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 COPAP53621 1224 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 RING1Q06587 406 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 EFEMP1Q12805 493 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 COL9A2Q14055 689 aaPredicted RBP16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 PREPLQ4J6C6 727 aaPredicted RBP16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 BHLHA9Q7RTU4 235 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 CCDC186Q7Z3E2 898 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 ZCCHC9Q8N567 271 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 SPRYD3Q8NCJ5 442 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 EEF2KMTQ96G04 330 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 PIWIL1Q96J94 861 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 GPR174Q9BXC1 333 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 DUSP16Q9BY84 665 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 NIF3L1Q9GZT8 377 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 PNPLA8Q9NP80 782 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 USP36Q9P275 1121 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 AGO1Q9UL18 857 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 TRAF3IP3Q9Y228 551 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 HPSEQ9Y251 543 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 TMEM131Q92545 1883 aa16.25■□□□□ 0.19
CLSTN3-213ENST00000541953 PTPRBP23467 1997 aa16.24■□□□□ 0.19
CLSTN3-213ENST00000541953 NR2F2P24468 414 aa16.24■□□□□ 0.19
CLSTN3-213ENST00000541953 CD6P30203 668 aa16.24■□□□□ 0.19
CLSTN3-213ENST00000541953 ENPP2Q13822 863 aa16.24■□□□□ 0.19
CLSTN3-213ENST00000541953 SDE2Q6IQ49 451 aa16.24■□□□□ 0.19
CLSTN3-213ENST00000541953 NUDT18Q6ZVK8 323 aa16.24■□□□□ 0.19
CLSTN3-213ENST00000541953 SNX21Q969T3 373 aa16.24■□□□□ 0.19
CLSTN3-213ENST00000541953 WSB2Q9NYS7 404 aaPredicted RBP16.24■□□□□ 0.19
CLSTN3-213ENST00000541953 THAP10Q9P2Z0 257 aaPredicted RBP16.24■□□□□ 0.19
CLSTN3-213ENST00000541953 SLC27A6Q9Y2P4 619 aa16.24■□□□□ 0.19
CLSTN3-213ENST00000541953 BPTFQ12830 3046 aa16.24■□□□□ 0.19
CLSTN3-213ENST00000541953 FAM221BA6H8Z2 402 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 GFRA2O00451 464 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms