RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	CINP	Q9BW66	212 aa	Predicted RBP	4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	TM2D2	Q9BX73	214 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	NUP62CL	Q9H1M0	184 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	MLXIPL	Q9NP71	852 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	MAFF	Q9ULX9	164 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	SQOR	Q9Y6N5	450 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	POM121B	A6NF01	834 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	MYMK	A6NI61	221 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	C16orf96	A6NNT2	1141 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	THAP12	O43422	761 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	TLR2	O60603	784 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	IL18RAP	O95256	599 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	SNHG28	P0DPA3	235 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	CTSA	P10619	480 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	ST6GAL1	P15907	406 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	LINC00205	P59089	165 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	RPS13	P62277	151 aa	Known RBP	4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	GPS1	Q13098	491 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	MTAP	Q13126	283 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	DAG1	Q14118	895 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	ZNF793	Q6ZN11	406 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	ANKRD13A	Q8IZ07	590 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	SDR16C5	Q8N3Y7	309 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	PHKB	Q93100	1093 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	FAM227B	Q96M60	508 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	STRBP	Q96SI9	672 aa	Known RBP	4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	BTBD1	Q9H0C5	482 aa		4.6	□□□□□ -1.67
PRKDC-210	ENST00000541488	LY6G6E	A0A0G2JKS1	128 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	TMEM191B	P0C7N4	346 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	AR	P10275	920 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	MTA1	Q13330	715 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	GAB1	Q13480	694 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	CLCA4	Q14CN2	919 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	FAM110C	Q1W6H9	321 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	CYB5RL	Q6IPT4	315 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	KRT28	Q7Z3Y7	464 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	SUN3	Q8TAQ9	357 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	IGFBPL1	Q8WX77	278 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	PIGK	Q92643	395 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	UNK	Q9C0B0	810 aa	Known RBP	4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	EBF3	Q9H4W6	596 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	ZMYM2	Q9UBW7	1377 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	CAPN11	Q9UMQ6	739 aa		4.59	□□□□□ -1.67
PRKDC-210	ENST00000541488	COL15A1	P39059	1388 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	SLC22A23	A1A5C7	686 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	C2CD4B	A6NLJ0	364 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	FOXN3	O00409	490 aa	Predicted RBP	4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	COQ9	O75208	318 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	PLAU	P00749	431 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	CBSL	P0DN79	551 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	PSG1	P11464	419 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	THBS4	P35443	961 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	CBS	P35520	551 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	DNASE1L3	Q13609	305 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	P3H1	Q32P28	736 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	AASDH	Q4L235	1098 aa	Predicted RBP	4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	TMEM196	Q5HYL7	178 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	COLCA1	Q6ZS62	124 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	PIP4P1	Q86T03	277 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	ATP11C	Q8NB49	1132 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZDHHC12	Q96GR4	267 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	FCRL5	Q96RD9	977 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZCWPW1	Q9H0M4	648 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	POT1	Q9NUX5	634 aa		4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	GAR1	Q9NY12	217 aa	Known RBP	4.58	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZSCAN9	O15535	394 aa	Predicted RBP	4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	CCNT2	O60583	730 aa	Known RBP	4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	NDST3	O95803	873 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	ALAD	P13716	330 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	ME1	P48163	572 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZNF543	Q08ER8	600 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	MTX1	Q13505	466 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	ACOX1	Q15067	660 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	CNGA3	Q16281	694 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	TMEM63B	Q5T3F8	832 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	FAXC	Q5TGI0	409 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	RAP1GAP2	Q684P5	730 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	ABLIM2	Q6H8Q1	611 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	CCDC150	Q8NCX0	1101 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	NSMCE1	Q8WV22	266 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	TBCB	Q99426	244 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	AGO4	Q9HCK5	861 aa	Known RBP	4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	ABHD10	Q9NUJ1	306 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	TMEM45A	Q9NWC5	275 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	ASNSD1	Q9NWL6	643 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488	HS3ST3B1	Q9Y662	390 aa		4.57	□□□□□ -1.68
PRKDC-210	ENST00000541488		A0A1W2PPC1	479 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	CD8B2	A6NJW9	211 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	INSIG1	O15503	277 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	CRYAB	P02511	175 aa	Known RBP	4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	MYL3	P08590	195 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	RPL17	P18621	184 aa	Known RBP	4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	FGFR2	P21802	821 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	TKT	P29401	623 aa	Known RBP	4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	HOXA7	P31268	230 aa	Predicted RBP	4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	IDUA	P35475	653 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	FOXG1	P55316	489 aa	Predicted RBP	4.56	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms