RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 F8A1P23610 371 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 ARF5P84085 180 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 AUHQ13825 339 aaKnown RBP8.99□□□□□ -0.97
YBX3-208ENST00000540447 POLA2Q14181 598 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 SNAP47Q5SQN1 464 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 FAM131AQ6UXB0 335 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 OTOAQ7RTW8 1153 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 CENPSQ8N2Z9 138 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 C12orf50Q8NA57 414 aaPredicted RBP8.99□□□□□ -0.97
YBX3-208ENST00000540447 PNPT1Q8TCS8 783 aaKnown RBP8.99□□□□□ -0.97
YBX3-208ENST00000540447 NINJ2Q9NZG7 142 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 CPSF3Q9UKF6 684 aaKnown RBP8.99□□□□□ -0.97
YBX3-208ENST00000540447 E7ENX8 843 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 H3BMM5 538 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 PDE8AO60658 829 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 KIZQ2M2Z5 673 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 TMEM214Q6NUQ4 689 aaKnown RBP8.99□□□□□ -0.97
YBX3-208ENST00000540447 EMC1Q8N766 993 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 TCF12Q99081 682 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 UGT2B28Q9BY64 529 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 WDR11Q9BZH6 1224 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 PLEKHG1Q9ULL1 1385 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 FAM237BA0A1B0GVD1 139 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 TESPA1A2RU30 521 aaPredicted RBP8.99□□□□□ -0.97
YBX3-208ENST00000540447 TMEM114B3SHH9 223 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 SDC4P31431 198 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 ETFBP38117 255 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 FEN1P39748 380 aaKnown RBP8.99□□□□□ -0.97
YBX3-208ENST00000540447 MXD4Q14582 209 aaPredicted RBP8.99□□□□□ -0.97
YBX3-208ENST00000540447 KHDC1Q4VXA5 237 aaKnown RBP8.99□□□□□ -0.97
YBX3-208ENST00000540447 ATP6AP1LQ52LC2 224 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 TMC7Q7Z402 723 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 MYO1HQ8N1T3 1032 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 ASCC1Q8N9N2 400 aaKnown RBP8.99□□□□□ -0.97
YBX3-208ENST00000540447 ZNF577Q9BSK1 485 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 SLC6A15Q9H2J7 730 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 SAV1Q9H4B6 383 aaPredicted RBP8.99□□□□□ -0.97
YBX3-208ENST00000540447 MAGEE1Q9HCI5 957 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 FAM49BQ9NUQ9 324 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 ANAPC2Q9UJX6 822 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 NAGPAQ9UK23 515 aa8.99□□□□□ -0.97
YBX3-208ENST00000540447 PTCH1Q13635 1447 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 ECE2O60344 883 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 PHKA2P46019 1235 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 MYBPC1Q00872 1141 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 NCOA4Q13772 614 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 TBC1D21Q8IYX1 336 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 ZNF540Q8NDQ6 660 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 CEP295NLQ96MC4 621 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 ERAP1Q9NZ08 941 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.98□□□□□ -0.97
YBX3-208ENST00000540447 WDR17Q8IZU2 1322 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 WDR19Q8NEZ3 1342 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 CNTFP26441 200 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 S100A2P29034 98 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 TGFBR2P37173 567 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 MAPKAPK2P49137 400 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 ECT2LQ008S8 904 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 FASTKQ14296 549 aaKnown RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 PDK4Q16654 411 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 GLRA4Q5JXX5 417 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 SNRNP48Q6IEG0 339 aaKnown RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 IFT43Q96FT9 208 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 TRIM9Q9C026 710 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 TMEM138Q9NPI0 162 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 ARL8BQ9NVJ2 186 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 STOX2Q9P2F5 926 aaPredicted RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 EMSYQ7Z589 1322 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 PLCH2O75038 1416 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 IFT140Q96RY7 1462 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 PDE2AO00408 941 aaPredicted RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 ABL1P00519 1130 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 ZNF37AP17032 561 aaPredicted RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 ERCC2P18074 760 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 TGM2P21980 687 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 RCVRNP35243 200 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 EIF2S3P41091 472 aaKnown RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 GPD2P43304 727 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 SLC16A1P53985 500 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 CDC73Q6P1J9 531 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 DENND1BQ6P3S1 775 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 AFTPHQ6ULP2 937 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 MIER2Q8N344 545 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 FIG4Q92562 907 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 WDR6Q9NNW5 1121 aaKnown RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 TSR3Q9UJK0 312 aaKnown RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 SUPT3HB4E1H0 165 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 SLC16A3O15427 465 aaKnown RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 ATMINO43313 823 aaPredicted RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 SEMA3AQ14563 771 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 NADK2Q4G0N4 442 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 C11orf63Q6NUN7 778 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 C4orf22Q6V702 233 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 CPXCR1Q8N123 301 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 TTC39CQ8N584 583 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 EFCAB3Q8N7B9 438 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 PIGSQ96S52 555 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 TLR10Q9BXR5 811 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 GPR108Q9NPR9 543 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 UCKL1Q9NWZ5 548 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms