RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 GSDMBQ8TAX9 411 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 URGCPQ8TCY9 931 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 NAT9Q9BTE0 207 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 CCDC195A0A1B0GUA6 201 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 PPEF2O14830 753 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 ATP9BO43861 1147 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 FAM189A1O60320 539 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 MLH1P40692 756 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 INHBEP58166 350 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 FAAP100Q0VG06 881 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 PAN2Q504Q3 1202 aaKnown RBP11.14□□□□□ -0.63
CLIP1-213ENST00000540338 FNBP1LQ5T0N5 605 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 STRADAQ7RTN6 431 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 RELL1Q8IUW5 271 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 WNT8BQ93098 351 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 MTBPQ96DY7 904 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 DUSP16Q9BY84 665 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 ULBP1Q9BZM6 244 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 RXFP1Q9HBX9 757 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 RBM47A0AV96 593 aaKnown RBP11.14□□□□□ -0.63
CLIP1-213ENST00000540338 SKIP12755 728 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 CYB5D1Q6P9G0 228 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 EPB41L4BQ9H329 900 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 CYLDQ9NQC7 956 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 DONSONQ9NYP3 566 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 RRN3Q9NYV6 651 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 ST3GAL5Q9UNP4 418 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 DOCK1Q14185 1865 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 BHMG1C9JSJ3 638 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-213ENST00000540338 OPHN1O60890 802 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 PIAS1O75925 651 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 F2P00734 622 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 GSTA2P09210 222 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 CYP3A5P20815 502 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 XRCC4Q13426 336 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 ICE2Q659A1 982 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 GLB1LQ6UWU2 654 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 PACS2Q86VP3 889 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 KIF9Q9HAQ2 790 aa11.14□□□□□ -0.63
CLIP1-213ENST00000540338 PPARGC1AQ9UBK2 798 aaKnown RBP11.14□□□□□ -0.63
CLIP1-213ENST00000540338 A0A1W2PPM1 405 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 MOCS2O96007 188 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-213ENST00000540338 APOEP02649 317 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 LMO2P25791 158 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 MRPS5P82675 430 aaKnown RBP11.13□□□□□ -0.63
CLIP1-213ENST00000540338 RCN2Q14257 317 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 VSTM1Q6UX27 236 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 TACO1Q9BSH4 297 aaKnown RBP11.13□□□□□ -0.63
CLIP1-213ENST00000540338 PHACTR1Q9C0D0 580 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 SSC5DA1L4H1 1573 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 BCLAF3A2AJT9 711 aaKnown RBP11.13□□□□□ -0.63
CLIP1-213ENST00000540338 AP3B1O00203 1094 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 DFFAO00273 331 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 CLDN5O00501 218 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 DPYSL4O14531 572 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 ADRA1DP25100 572 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 LILRA4P59901 499 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 THOC5Q13769 683 aaKnown RBP11.13□□□□□ -0.63
CLIP1-213ENST00000540338 SLC25A52Q3SY17 297 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 SCARA3Q6AZY7 606 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 CRYBG2Q8N1P7 616 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 PPFIBP2Q8ND30 876 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 ARMC2Q8NEN0 867 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 SLC35F5Q8WV83 523 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 ZNF75CPQ92670 426 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-213ENST00000540338 APBB2Q92870 758 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 ABCF3Q9NUQ8 709 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 MID2Q9UJV3 735 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 LRFN2Q9ULH4 789 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 GRID1Q9ULK0 1009 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 C3orf70A6NLC5 250 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-213ENST00000540338 RNF103O00237 685 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 IGF2BP3O00425 579 aaKnown RBP eCLIP11.13□□□□□ -0.63
CLIP1-213ENST00000540338 POMCP01189 267 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 GOT1P17174 413 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 RAB27AP51159 221 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 OVGP1Q12889 678 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 C4orf50Q6ZRC1 276 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 KIF2BQ8N4N8 673 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 PDCD7Q8N8D1 485 aaKnown RBP11.13□□□□□ -0.63
CLIP1-213ENST00000540338 NAT8LQ8N9F0 302 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 PCDH19Q8TAB3 1148 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 ADAM32Q8TC27 787 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 LRRN4Q8WUT4 740 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 SMARCD1Q96GM5 515 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 CDHR5Q9HBB8 845 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 FAM105AQ9NUU6 356 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 CNTN3Q9P232 1028 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 DSEQ9UL01 958 aa11.13□□□□□ -0.63
CLIP1-213ENST00000540338 TNS1Q9HBL0 1735 aaKnown RBP11.13□□□□□ -0.63
CLIP1-213ENST00000540338 TCRBV9S1A1TA0A576 114 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 NCAM2O15394 837 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 AVILO75366 819 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 PGK1P00558 417 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 KITP10721 976 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 SCNN1GP51170 649 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 CDK16Q00536 496 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 PDK4Q16654 411 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 E2F7Q96AV8 911 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 APOPT1Q96IL0 206 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms