RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 CDC25CP30307 473 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 MAN1A1P33908 653 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 ATXN1P54253 815 aaKnown RBP19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 CYP4F8P98187 520 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 ACAP1Q15027 740 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 SLC5A9Q2M3M2 681 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 MSANTD2Q6P1R3 559 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 PDZD4Q76G19 769 aaPredicted RBP19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 TAC4Q86UU9 113 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 ZNF276Q8N554 614 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 SHKBP1Q8TBC3 707 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 FAM172AQ8WUF8 416 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 C16orf45Q96MC5 204 aaPredicted RBP19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 RRN3Q9NYV6 651 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 SFMBT1Q9UHJ3 866 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 GREB1Q4ZG55 1949 aa19.73■□□□□ 0.75
TNFRSF1A-213ENST00000540022 MOSPD3O75425 235 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 LRCH4O75427 683 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 ENDOD1O94919 500 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 IGLV3-25P01717 112 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 HDAC4P56524 1084 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 GNG11P61952 73 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 PUS10Q3MIT2 529 aaKnown RBP19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 PRSS36Q5K4E3 855 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 C10orf120Q5SQS8 335 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 HECTD3Q5T447 861 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 CC2D1AQ6P1N0 951 aaPredicted RBP19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 STRADAQ7RTN6 431 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 GPR149Q86SP6 731 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 NT5DC3Q86UY8 548 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 SYCE1Q8N0S2 351 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 LEMD2Q8NC56 503 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 MRPS31Q92665 395 aaKnown RBP19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 WDR24Q96S15 920 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 SMOC2Q9H3U7 446 aa19.72■□□□□ 0.75
TNFRSF1A-213ENST00000540022 SYNJ2BP-COX16A0A087WUM0 186 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 COCHO43405 550 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 RNF8O76064 485 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 FGF19O95750 216 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 OAS1P00973 400 aaKnown RBP19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 TCF4P15884 667 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 HOXB8P17481 243 aaPredicted RBP19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 SLC1A1P43005 524 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 TUBP50607 506 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 EFEMP1Q12805 493 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 NME3Q13232 169 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 STXBP5Q5T5C0 1151 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 TXNDC8Q6A555 127 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 PGAP3Q96FM1 320 aaPredicted RBP19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 GCNAQ96QF7 691 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 RNF38Q9H0F5 515 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 OLA1Q9NTK5 396 aaKnown RBP19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 DDIT4Q9NX09 232 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 COX16Q9P0S2 106 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 MTCL1Q9Y4B5 1905 aaKnown RBP19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 MSI1O43347 362 aaKnown RBP19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 SPOPO43791 374 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 ATP5C1P36542 298 aaKnown RBP19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 TAS2R40P59535 323 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 DEUP1Q05D60 604 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 EIF4EBP2Q13542 120 aaPredicted RBP19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 PEX26Q7Z412 305 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 CDK5RAP1Q96SZ6 601 aaKnown RBP19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 FAM204AQ9H8W3 233 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 TRPC7Q9HCX4 862 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 CD320Q9NPF0 282 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 PIGVQ9NUD9 493 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 RASAL2Q9UJF2 1139 aa19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 PACSIN2Q9UNF0 486 aaPredicted RBP19.71■□□□□ 0.75
TNFRSF1A-213ENST00000540022 MYO16Q9Y6X6 1858 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 FANCGO15287 622 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 IRAK2O43187 625 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 MBTPS2O43462 519 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 ZNF500O60304 480 aaPredicted RBP19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 MIPP30301 263 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 RDXP35241 583 aaKnown RBP19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 PCK1P35558 622 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 ETF1P62495 437 aaKnown RBP19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 TEAD2Q15562 447 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 KLHDC10Q6PID8 442 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 MIB1Q86YT6 1006 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 ARL14EPQ8N8R7 260 aaPredicted RBP19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 SMRP1Q8NCR6 262 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 CD101Q93033 1021 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 SLC22A12Q96S37 553 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 CYP2S1Q96SQ9 504 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 ADAM7Q9H2U9 754 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 WDR6Q9NNW5 1121 aaKnown RBP19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.7■□□□□ 0.742e-6■■□□□ 12.2
TNFRSF1A-213ENST00000540022 MARCH2Q9P0N8 246 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 DNMT3LQ9UJW3 386 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 AMFRQ9UKV5 643 aa19.7■□□□□ 0.74
TNFRSF1A-213ENST00000540022 ZNF197O14709 1029 aa19.69■□□□□ 0.74
TNFRSF1A-213ENST00000540022 OLFM2O95897 454 aa19.69■□□□□ 0.74
TNFRSF1A-213ENST00000540022 DESP17661 470 aa19.69■□□□□ 0.74
TNFRSF1A-213ENST00000540022 IL1R2P27930 398 aa19.69■□□□□ 0.74
TNFRSF1A-213ENST00000540022 SSR1P43307 286 aaKnown RBP19.69■□□□□ 0.74
TNFRSF1A-213ENST00000540022 SLC25A11Q02978 314 aaKnown RBP19.69■□□□□ 0.74
TNFRSF1A-213ENST00000540022 MEI1Q5TIA1 1274 aa19.69■□□□□ 0.74
TNFRSF1A-213ENST00000540022 TXNRD3NBQ6F5E7 133 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms