RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 USP12O75317 370 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 POU2F2P09086 479 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 MTHFSP49914 203 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 EGR4Q05215 589 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 CCDC173Q0VFZ6 552 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 PWP2Q15269 919 aaKnown RBP2.92□□□□□ -1.94
SKA3-207ENST00000536239 PGS1Q32NB8 556 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 HSP90AB4PQ58FF6 505 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 SASS6Q6UVJ0 657 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 SLC39A5Q6ZMH5 540 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 ZNF771Q7L3S4 317 aaPredicted RBP2.92□□□□□ -1.94
SKA3-207ENST00000536239 NGDNQ8NEJ9 315 aaKnown RBP2.92□□□□□ -1.94
SKA3-207ENST00000536239 DNAJB14Q8TBM8 379 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 MRGPRX1Q96LB2 322 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 FAM210AQ96ND0 272 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 FCRL5Q96RD9 977 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 PPP1R9BQ96SB3 815 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 SF3B5Q9BWJ5 86 aaKnown RBP2.92□□□□□ -1.94
SKA3-207ENST00000536239 SLC13A1Q9BZW2 595 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 TRIM5Q9C035 493 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 MS4A7Q9GZW8 240 aaPredicted RBP2.92□□□□□ -1.94
SKA3-207ENST00000536239 CCDC8Q9H0W5 538 aaPredicted RBP2.92□□□□□ -1.94
SKA3-207ENST00000536239 GRPEL1Q9HAV7 217 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 AGO4Q9HCK5 861 aaKnown RBP2.92□□□□□ -1.94
SKA3-207ENST00000536239 FZD3Q9NPG1 666 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 DONSONQ9NYP3 566 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 ASAP1Q9ULH1 1129 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 FZD4Q9ULV1 537 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 TMA7Q9Y2S6 64 aaKnown RBP2.92□□□□□ -1.94
SKA3-207ENST00000536239 KIF16BQ96L93 1317 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 DHX57Q6P158 1386 aaKnown RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 SLC22A23A1A5C7 686 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 SOCS5O75159 536 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 ACAA1P09110 424 aaPredicted RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 ZNF853P0CG23 659 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 HOXA7P31268 230 aaPredicted RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 TNNT3P45378 269 aaPredicted RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 GTF2A1P52655 376 aaPredicted RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 SLC12A2P55011 1212 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 DSCR9P59020 149 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 GPC5P78333 572 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 HMGN5P82970 282 aaKnown RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 TIAL1Q01085 375 aaKnown RBP eCLIP2.91□□□□□ -1.94
SKA3-207ENST00000536239 DEUP1Q05D60 604 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 ITKQ08881 620 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 DDX10Q13206 875 aaKnown RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 HDAC1Q13547 482 aaPredicted RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 MTMR1Q13613 665 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 PTPN21Q16825 1174 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 SLC4A8Q2Y0W8 1093 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 NUGGCQ68CJ6 796 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 LMBRD2Q68DH5 695 aaPredicted RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 TRAPPC11Q7Z392 1133 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 PDCL2Q8N4E4 241 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 PNPLA1Q8N8W4 532 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 ELP5Q8TE02 316 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 RAPGEF4Q8WZA2 1011 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 ITFG2Q969R8 447 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 CDK5RAP3Q96JB5 506 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 P2RX7Q99572 595 aaKnown RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 PAIP2Q9BPZ3 127 aaKnown RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 RMI1Q9H9A7 625 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 USP29Q9HBJ7 922 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 MED4Q9NPJ6 270 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 CNNM1Q9NRU3 951 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 ARL8BQ9NVJ2 186 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 SEMA5BQ9P283 1151 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 DNMT3BQ9UBC3 853 aaKnown RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 CPA4Q9UI42 421 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 ANAPC4Q9UJX5 808 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 KNSTRNQ9Y448 316 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 SMG6Q86US8 1419 aaKnown RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 OBSCNQ5VST9 7968 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 VIRMAQ69YN4 1812 aaKnown RBP2.91□□□□□ -1.94
SKA3-207ENST00000536239 SMARCA2P51531 1590 aa2.91□□□□□ -1.94
SKA3-207ENST00000536239 BAZ1BQ9UIG0 1483 aaKnown RBP2.9□□□□□ -1.94
SKA3-207ENST00000536239 A0A0G2JK05 382 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 EXOC5O00471 708 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 PODXLO00592 558 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 NEFHP12036 1026 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 TCEA1P23193 301 aaKnown RBP2.9□□□□□ -1.95
SKA3-207ENST00000536239 RPS6KB1P23443 525 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 TDO2P48775 406 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 CBX1P83916 185 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 TRDNQ13061 729 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 CTBP1Q13363 440 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 CCDC96Q2M329 555 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 LCE1FQ5T754 118 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 HIST2H2BCQ6DN03 193 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 RINLQ6ZS11 566 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 TRILQ7L0X0 811 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 RTL10Q7L3V2 364 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 TFAP2DQ7Z6R9 452 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 RPAINQ86UA6 219 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 TMTC2Q8N394 836 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 MYRIPQ8NFW9 859 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 PIGKQ92643 395 aa2.9□□□□□ -1.95
SKA3-207ENST00000536239 MTFMTQ96DP5 389 aaKnown RBP2.9□□□□□ -1.95
SKA3-207ENST00000536239 ZBTB45Q96K62 511 aaPredicted RBP2.9□□□□□ -1.95
SKA3-207ENST00000536239 PAPOLBQ9NRJ5 636 aaKnown RBP2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms