RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 RIBC1Q8N443 379 aaPredicted RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 METTL13Q8N6R0 699 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 LRRC57Q8N9N7 239 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 PARD3BQ8TEW8 1205 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 CKAP2Q8WWK9 683 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 FAM168AQ92567 244 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 STMN2Q93045 179 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 TEKT1Q969V4 418 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 PPP1R14BQ96C90 147 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 HES6Q96HZ4 224 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 OLFM3Q96PB7 478 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 LRRC37BQ96QE4 947 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 GORASP1Q9BQQ3 440 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 CENPKQ9BS16 269 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 BOCQ9BWV1 1114 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 CRNKL1Q9BZJ0 848 aaKnown RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 DDX47Q9H0S4 455 aaKnown RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 TMEM60Q9H2L4 133 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 DPH5Q9H2P9 285 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 PPCSQ9HAB8 311 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 KCNMB3Q9NPA1 279 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 DMAP1Q9NPF5 467 aaPredicted RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 UBN1Q9NPG3 1134 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 ZNF277Q9NRM2 450 aaPredicted RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 ATP8A2Q9NTI2 1148 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 IRAK4Q9NWZ3 460 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 NDUFA13Q9P0J0 144 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 ADAM22Q9P0K1 906 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 WDR35Q9P2L0 1181 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 ARPP21Q9UBL0 812 aaPredicted RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 SEC63Q9UGP8 760 aaKnown RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 L3MBTL1Q9Y468 752 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 USH1CQ9Y6N9 552 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 PFASO15067 1338 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 TSPY2A6NKD2 308 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 TCP11X1B4DZS4 312 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 NVLO15381 856 aaKnown RBP6.93□□□□□ -1.3
USP28-202ENST00000535607 MARCH6O60337 910 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 BRINP1O60477 761 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 CCNT1O60563 726 aaKnown RBP6.93□□□□□ -1.3
USP28-202ENST00000535607 TTLL1O95922 423 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 FGGP02679 453 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 CKMP06732 381 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 LINGO3P0C6S8 592 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 TMEM253P0C7T8 217 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 KRT13P13646 458 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 STAT1P42224 750 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 PSMC4P43686 418 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 PEX5P50542 639 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 KPNA1P52294 538 aaPredicted RBP6.93□□□□□ -1.3
USP28-202ENST00000535607 RAD23BP54727 409 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 KCNJ2P63252 427 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 MAPK7Q13164 816 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 PCBP1Q15365 356 aaKnown RBP eCLIP6.93□□□□□ -1.3
USP28-202ENST00000535607 DHCR24Q15392 516 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 NPY5RQ15761 445 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 CALCRLQ16602 461 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 SEL1L2Q5TEA6 688 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 CIAPIN1Q6FI81 312 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 ABHD17CQ6PCB6 329 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 PHLDB2Q86SQ0 1253 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 LCA5Q86VQ0 697 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 ERICH1Q86X53 443 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 DDX42Q86XP3 938 aaKnown RBP eCLIP6.93□□□□□ -1.3
USP28-202ENST00000535607 FAM133AQ8N9E0 248 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 MDM1Q8TC05 714 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 ZNF398Q8TD17 642 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 LRRC8CQ8TDW0 803 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 GRK7Q8WTQ7 553 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 RFFLQ8WZ73 363 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 KIFAP3Q92845 792 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 GFM2Q969S9 779 aaKnown RBP6.93□□□□□ -1.3
USP28-202ENST00000535607 SCYL1Q96KG9 808 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 NR1H4Q96RI1 486 aaPredicted RBP6.93□□□□□ -1.3
USP28-202ENST00000535607 NUDCD1Q96RS6 583 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 RIOK1Q9BRS2 568 aaKnown RBP6.93□□□□□ -1.3
USP28-202ENST00000535607 PITPNM3Q9BZ71 974 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 SP110Q9HB58 689 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 KCNK9Q9NPC2 374 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 SAR1AQ9NR31 198 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 ABCF3Q9NUQ8 709 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 BARHL2Q9NY43 387 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 SENP1Q9P0U3 644 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 PCYOX1Q9UHG3 505 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 ANGPTL2Q9UKU9 493 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 CBLCQ9ULV8 474 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 TMCO1Q9UM00 188 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 PCDHA6Q9UN73 950 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 STXBP5LQ9Y2K9 1186 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 ATP23Q9Y6H3 246 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 NCANO14594 1321 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 MROH7Q68CQ1 1323 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 UTRNP46939 3433 aa6.93□□□□□ -1.3
USP28-202ENST00000535607 GPR75-ASB3A0A0A6YYF3 556 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 GTPBP10A4D1E9 387 aaKnown RBP6.92□□□□□ -1.3
USP28-202ENST00000535607 CBX4O00257 560 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 SLC16A3O15427 465 aaKnown RBP6.92□□□□□ -1.3
USP28-202ENST00000535607 TCEA3O75764 348 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 PENKP01210 267 aaPredicted RBP6.92□□□□□ -1.3
USP28-202ENST00000535607 AFPP02771 609 aaKnown RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms