RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 PJA1Q8NG27 643 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 SUN3Q8TAQ9 357 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 EDC3Q96F86 508 aaKnown RBP3.26□□□□□ -1.89
CD44-238ENST00000534296 TBCBQ99426 244 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 MPHOSPH6Q99547 160 aaKnown RBP3.26□□□□□ -1.89
CD44-238ENST00000534296 TMEM79Q9BSE2 394 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 NUAK2Q9H093 628 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 ARNT2Q9HBZ2 717 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 FZD4Q9ULV1 537 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 SPATA31A1Q5TZJ5 1347 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 ZNF521Q96K83 1311 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 SOCS2O14508 198 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 PPEF2O14830 753 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 HNRNPDLO14979 420 aaKnown RBP3.25□□□□□ -1.89
CD44-238ENST00000534296 INPPL1O15357 1258 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 CA12O43570 354 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 MOSPD3O75425 235 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 TMEM191BP0C7N4 346 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 MST1P26927 711 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 GALNSP34059 522 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 SLC12A2P55011 1212 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 WDR5P61964 334 aaKnown RBP3.25□□□□□ -1.89
CD44-238ENST00000534296 ZNF91Q05481 1191 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 NSUN2Q08J23 767 aaKnown RBP eCLIP3.25□□□□□ -1.89
CD44-238ENST00000534296 DNASE1L3Q13609 305 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 LAMB3Q13751 1172 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 KLF9Q13886 244 aaPredicted RBP3.25□□□□□ -1.89
CD44-238ENST00000534296 DAZAP2Q15038 168 aaPredicted RBP3.25□□□□□ -1.89
CD44-238ENST00000534296 ACOX1Q15067 660 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 LONRF1Q17RB8 773 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 LRCH2Q5VUJ6 765 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 ARL6IP4Q66PJ3 421 aaKnown RBP3.25□□□□□ -1.89
CD44-238ENST00000534296 ABLIM2Q6H8Q1 611 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 ZNF425Q6IV72 752 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 SHC4Q6S5L8 630 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 KRT27Q7Z3Y8 459 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 ANKRD13BQ86YJ7 626 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 CCDC28AQ8IWP9 274 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 ZNF398Q8TD17 642 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 PNISRQ8TF01 805 aaKnown RBP3.25□□□□□ -1.89
CD44-238ENST00000534296 BRI3BPQ8WY22 251 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 OVCA2Q8WZ82 227 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 MAP4K1Q92918 833 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 ZNF566Q969W8 418 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 NUDT22Q9BRQ3 303 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 TRIM2Q9C040 744 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.25□□□□□ -1.89
CD44-238ENST00000534296 CA14Q9ULX7 337 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 COMMD10Q9Y6G5 202 aa3.25□□□□□ -1.89
CD44-238ENST00000534296 MYMKA6NI61 221 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 PODXLO00592 558 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 KCNQ3O43525 872 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 PEX14O75381 377 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 TOP3BO95985 862 aaKnown RBP3.24□□□□□ -1.89
CD44-238ENST00000534296 MYL3P08590 195 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 SRGAP2BP0DMP2 458 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 SCP2P22307 547 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 TNFSF4P23510 183 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 DUSP1P28562 367 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 HTR7P34969 479 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 IGHMBP2P38935 993 aaKnown RBP3.24□□□□□ -1.89
CD44-238ENST00000534296 AK2P54819 239 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 DEUP1Q05D60 604 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 BTKQ06187 659 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 SEMA3BQ13214 749 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 SLC14A1Q13336 389 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 PMS2P11Q13670 270 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 ATP1A4Q13733 1029 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 CSHL1Q14406 222 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 KCNJ12Q14500 433 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 KPNB1Q14974 876 aaKnown RBP3.24□□□□□ -1.89
CD44-238ENST00000534296 SLC5A9Q2M3M2 681 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 MAP9Q49MG5 647 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 AASDHQ4L235 1098 aaPredicted RBP3.24□□□□□ -1.89
CD44-238ENST00000534296 AWAT1Q58HT5 328 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 PAPD7Q5XG87 772 aaKnown RBP3.24□□□□□ -1.89
CD44-238ENST00000534296 CLASRPQ8N2M8 674 aaKnown RBP3.24□□□□□ -1.89
CD44-238ENST00000534296 PIGKQ92643 395 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 KAT2BQ92831 832 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 WDR24Q96S15 920 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 MYD88Q99836 296 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 SENP7Q9BQF6 1050 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 PCDHAC1Q9H158 963 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 HELLSQ9NRZ9 838 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 RXFP3Q9NSD7 469 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 FBXO28Q9NVF7 368 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 ELOVL5Q9NYP7 299 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 IPO11Q9UI26 975 aaKnown RBP3.24□□□□□ -1.89
CD44-238ENST00000534296 ASAP1Q9ULH1 1129 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 MAN2B2Q9Y2E5 1009 aa3.24□□□□□ -1.89
CD44-238ENST00000534296 HEMK1Q9Y5R4 338 aaPredicted RBP3.24□□□□□ -1.89
CD44-238ENST00000534296 SIRT4Q9Y6E7 314 aaPredicted RBP3.24□□□□□ -1.89
CD44-238ENST00000534296 RASA4BC9J798 803 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 FCHO1O14526 889 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 APAF1O14727 1248 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 RASA4O43374 803 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 PRAMEF2O60811 474 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 FGF18O76093 207 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 IGKV2-30P06310 120 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 ARP10275 920 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms