RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 HMGB4Q8WW32 186 aa16.19■□□□□ 0.18
CPSF1-211ENST00000533492 NDRG1Q92597 394 aaKnown RBP16.19■□□□□ 0.18
CPSF1-211ENST00000533492 SRRTQ9BXP5 876 aaKnown RBP16.19■□□□□ 0.18
CPSF1-211ENST00000533492 VPS45Q9NRW7 570 aa16.19■□□□□ 0.18
CPSF1-211ENST00000533492 PLK2Q9NYY3 685 aa16.19■□□□□ 0.18
CPSF1-211ENST00000533492 STARD13Q9Y3M8 1113 aa16.19■□□□□ 0.18
CPSF1-211ENST00000533492 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.19■□□□□ 0.18
CPSF1-211ENST00000533492 ABCA7Q8IZY2 2146 aa16.19■□□□□ 0.18
CPSF1-211ENST00000533492 CACNA1AO00555 2505 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 TCRBV21S2A2A0A5A6 115 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 O00370 1275 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 KLKB1P03952 638 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 SETSIPP0DME0 302 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 NTSR1P30989 418 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 CORO1AP31146 461 aaKnown RBP16.18■□□□□ 0.18
CPSF1-211ENST00000533492 WASP42768 502 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 ADIGQ0VDE8 80 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 BYSLQ13895 437 aaKnown RBP16.18■□□□□ 0.18
CPSF1-211ENST00000533492 PLA2G2CQ5R387 149 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 LCLAT1Q6UWP7 414 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 RRAGAQ7L523 313 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 CREBRFQ8IUR6 639 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 CHPFQ8IZ52 775 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 UBR7Q8N806 425 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 EHBP1Q8NDI1 1231 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 SPACA7Q96KW9 195 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 OLA1Q9NTK5 396 aaKnown RBP16.18■□□□□ 0.18
CPSF1-211ENST00000533492 THADAQ6YHU6 1953 aa16.18■□□□□ 0.18
CPSF1-211ENST00000533492 CAVIN2O95810 425 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 AFPP02771 609 aaKnown RBP16.17■□□□□ 0.18
CPSF1-211ENST00000533492 CYBBP04839 570 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 CHRM1P11229 460 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-211ENST00000533492 LCP1P13796 627 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 HOXB2P14652 356 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 UBE2HP62256 183 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 STILQ15468 1287 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 CNGA2Q16280 664 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 CAMK4Q16566 473 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 BSPRYQ5W0U4 402 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 EGFLAMQ63HQ2 1017 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 PMS2CLQ68D20 193 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 IL31Q6EBC2 164 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 TOGARAM2Q6ZUX3 1019 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 DENND1CQ8IV53 801 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 TRIM59Q8IWR1 403 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 TRIML1Q8N9V2 468 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 OLIG1Q8TAK6 271 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 LMO3Q8TAP4 145 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 RLN3Q8WXF3 142 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 KCTD13Q8WZ19 329 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 KAT5Q92993 513 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 PLD4Q96BZ4 506 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 SMOC1Q9H4F8 434 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 CNGB3Q9NQW8 809 aa16.17■□□□□ 0.18
CPSF1-211ENST00000533492 AGO1Q9UL18 857 aaKnown RBP16.17■□□□□ 0.18
CPSF1-211ENST00000533492 BCLAF3A2AJT9 711 aaKnown RBP16.16■□□□□ 0.18
CPSF1-211ENST00000533492 PRRT4C9JH25 899 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 M0QYV0 167 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 RNF225M0QZC1 329 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-211ENST00000533492 CISD3P0C7P0 127 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 BCKDHBP21953 392 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 P2RY2P41231 377 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 DHPSP49366 369 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-211ENST00000533492 HARS2P49590 506 aaKnown RBP16.16■□□□□ 0.18
CPSF1-211ENST00000533492 RGS7P49802 495 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 LPCAT2Q7L5N7 544 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 FMNL3Q8IVF7 1028 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 RBBP8NLQ8NC74 664 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-211ENST00000533492 DDI1Q8WTU0 396 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 TFAP2BQ92481 460 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 EDEM1Q92611 657 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 ABCC13Q9NSE7 274 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 CHMP5Q9NZZ3 219 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 KIAA1468Q9P260 1216 aa16.16■□□□□ 0.18
CPSF1-211ENST00000533492 YJEFN3A6XGL0 299 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 E7ENQ6 273 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 BRD2P25440 801 aaKnown RBP16.15■□□□□ 0.18
CPSF1-211ENST00000533492 MARSP56192 900 aaKnown RBP16.15■□□□□ 0.18
CPSF1-211ENST00000533492 GCNT1Q02742 428 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 PKDCCQ504Y2 493 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 BHLHA9Q7RTU4 235 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 CYP2U1Q7Z449 544 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 ARHGEF19Q8IW93 802 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 CPXM2Q8N436 756 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 SLC35F5Q8WV83 523 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 DDX1Q92499 740 aaKnown RBP16.15■□□□□ 0.18
CPSF1-211ENST00000533492 GOLGA1Q92805 767 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 ACOX2Q99424 681 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 SFMBT1Q9UHJ3 866 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 FBXO10Q9UK96 956 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 HCN2Q9UL51 889 aa16.15■□□□□ 0.18
CPSF1-211ENST00000533492 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.15■□□□□ 0.18
CPSF1-211ENST00000533492 HBS1LQ9Y450 684 aaKnown RBP16.15■□□□□ 0.18
CPSF1-211ENST00000533492 DNAH14Q0VDD8 3507 aa16.14■□□□□ 0.17
CPSF1-211ENST00000533492 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.14■□□□□ 0.17
CPSF1-211ENST00000533492 PIK3R2O00459 728 aa16.14■□□□□ 0.17
CPSF1-211ENST00000533492 PENKP01210 267 aaPredicted RBP16.14■□□□□ 0.17
CPSF1-211ENST00000533492 KRT5P13647 590 aa16.14■□□□□ 0.17
CPSF1-211ENST00000533492 KCNA4P22459 653 aa16.14■□□□□ 0.17
CPSF1-211ENST00000533492 LIMK1P53667 647 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms