RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 WDR53Q7Z5U6 358 aaPredicted RBP4.69□□□□□ -1.66
CD44-235ENST00000532339 CD99L2Q8TCZ2 262 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 SCARB1Q8WTV0 552 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 MVB12AQ96EY5 273 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 SLC35A4Q96G79 324 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 SLC39A13Q96H72 371 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 ZNF778Q96MU6 729 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 ASB2Q96Q27 587 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 PSMD1Q99460 953 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 GTPBP4Q9BZE4 634 aaKnown RBP4.69□□□□□ -1.66
CD44-235ENST00000532339 SEMA4CQ9C0C4 833 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 SLC12A5Q9H2X9 1139 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 ZNF70Q9UC06 446 aaPredicted RBP4.69□□□□□ -1.66
CD44-235ENST00000532339 SERGEFQ9UGK8 458 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 SH2B3Q9UQQ2 575 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 ARHGEF17Q96PE2 2063 aaPredicted RBP4.69□□□□□ -1.66
CD44-235ENST00000532339 KMT2BQ9UMN6 2715 aaPredicted RBP4.69□□□□□ -1.66
CD44-235ENST00000532339 LTN1O94822 1766 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 USP34Q70CQ2 3546 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 WDR91A4D1P6 747 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 QSOX1O00391 747 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 MYL1P05976 194 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 PDHA1P08559 390 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 ITGB8P26012 769 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 PPIFP30405 207 aaKnown RBP4.68□□□□□ -1.66
CD44-235ENST00000532339 CRKLP46109 303 aaKnown RBP4.68□□□□□ -1.66
CD44-235ENST00000532339 ZNF134P52741 427 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 SOX8P57073 446 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 NKX6-1P78426 367 aaPredicted RBP4.68□□□□□ -1.66
CD44-235ENST00000532339 GBX1Q14549 363 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 PLS1Q14651 629 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 IQCB1Q15051 598 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 ARHGEF6Q15052 776 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 TMEM119Q4V9L6 283 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 B3GNT9Q6UX72 402 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.68□□□□□ -1.66
CD44-235ENST00000532339 VGLL2Q8N8G2 317 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 FANCBQ8NB91 859 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 PMM1Q92871 262 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 RUNDC1Q96C34 613 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 TIFAQ96CG3 184 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 MTFMTQ96DP5 389 aaKnown RBP4.68□□□□□ -1.66
CD44-235ENST00000532339 CDK5RAP3Q96JB5 506 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 LRGUKQ96M69 825 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 MOGAT1Q96PD6 335 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 PTDSS2Q9BVG9 487 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 TTYH3Q9C0H2 523 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 SARS2Q9NP81 518 aaKnown RBP4.68□□□□□ -1.66
CD44-235ENST00000532339 CHST12Q9NRB3 414 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 SH3BP4Q9P0V3 963 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 NARFQ9UHQ1 456 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 PLEKHM1Q9Y4G2 1056 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 C5orf42Q9H799 3197 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 ZNF804BA4D1E1 1349 aa4.68□□□□□ -1.66
CD44-235ENST00000532339 ANKRD11Q6UB99 2663 aaPredicted RBP4.68□□□□□ -1.66
CD44-235ENST00000532339 H0YIZ8 118 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 ERC2O15083 957 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 PLIN1O60240 522 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 DNAJB5O75953 348 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 UNC5CO95185 931 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 KCNJ5P48544 419 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 PXNP49023 591 aaPredicted RBP4.67□□□□□ -1.66
CD44-235ENST00000532339 GMPSP49915 693 aaPredicted RBP4.67□□□□□ -1.66
CD44-235ENST00000532339 EEFSECP57772 596 aaKnown RBP4.67□□□□□ -1.66
CD44-235ENST00000532339 GALEQ14376 348 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 GRM3Q14832 879 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 PRR5LQ6MZQ0 368 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 ZNF782Q6ZMW2 699 aaPredicted RBP4.67□□□□□ -1.66
CD44-235ENST00000532339 MAVSQ7Z434 540 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 PCSK9Q8NBP7 692 aaKnown RBP4.67□□□□□ -1.66
CD44-235ENST00000532339 MAP3K14Q99558 947 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 EPHX3Q9H6B9 360 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 DLL3Q9NYJ7 618 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 DDX20Q9UHI6 824 aaKnown RBP4.67□□□□□ -1.66
CD44-235ENST00000532339 SERTAD3Q9UJW9 196 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 RIPOR2Q9Y4F9 1068 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 ARFGEF2Q9Y6D5 1785 aa4.67□□□□□ -1.66
CD44-235ENST00000532339 COL2A1P02458 1487 aaPredicted RBP4.67□□□□□ -1.66
CD44-235ENST00000532339 MYH14Q7Z406 1995 aaKnown RBP4.67□□□□□ -1.66
CD44-235ENST00000532339 ANKRD31Q8N7Z5 1873 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 SMIM22K7EJ46 135 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 DCLK1O15075 740 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 TPD52L2O43399 206 aaKnown RBP4.66□□□□□ -1.66
CD44-235ENST00000532339 LATS1O95835 1130 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 ERBB2P04626 1255 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 IL6RP08887 468 aaPredicted RBP4.66□□□□□ -1.66
CD44-235ENST00000532339 CAPN2P17655 700 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 HDCP19113 662 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 CERS1P27544 350 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 CYP2C18P33260 490 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 LILRA4P59901 499 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 MRPS5P82675 430 aaKnown RBP4.66□□□□□ -1.66
CD44-235ENST00000532339 SATB1Q01826 763 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 SP3Q02447 781 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 ZNF267Q14586 743 aaPredicted RBP4.66□□□□□ -1.66
CD44-235ENST00000532339 PROSER3Q2NL68 480 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 SLC44A4Q53GD3 710 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 MTX3Q5HYI7 312 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 KHDC1LQ5JSQ8 128 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 TREML2Q5T2D2 321 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms