RNA–Protein interactions for RNA: ENST00000531551.5

CTSB-222, Transcript of cathepsin B, human

TSL 1 (best)

Gene CTSB, Length 1,855 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSB-222	ENST00000531551	GOLPH3	Q9H4A6	298 aa		18.41	■□□□□ 0.54
CTSB-222	ENST00000531551	TASP1	Q9H6P5	420 aa		18.41	■□□□□ 0.54
CTSB-222	ENST00000531551	RRN3	Q9NYV6	651 aa		18.41	■□□□□ 0.54
CTSB-222	ENST00000531551	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	18.41	■□□□□ 0.54
CTSB-222	ENST00000531551	USP15	Q9Y4E8	981 aa	Predicted RBP	18.41	■□□□□ 0.54
CTSB-222	ENST00000531551	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	SLC12A8	A0AV02	714 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	BUB1B	O60566	1050 aa	Predicted RBP	18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	DDX6	P26196	483 aa	Known RBP eCLIP	18.4	■□□□□ 0.54	6e-9	■□□□□ 9.3
CTSB-222	ENST00000531551	GBP1	P32455	592 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	AVPR1A	P37288	418 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	PTPN9	P43378	593 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	PIGH	Q14442	188 aa	Predicted RBP	18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	RAB6C	Q53S08	254 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	SCYL2	Q6P3W7	929 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	DAAM2	Q86T65	1068 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	MAFA	Q8NHW3	353 aa	Predicted RBP	18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	RNF34	Q969K3	372 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	ZSWIM3	Q96MP5	696 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	SERPINB11	Q96P15	392 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	ADAM33	Q9BZ11	813 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	IRX2	Q9BZI1	471 aa	Predicted RBP	18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	RAB6C	Q9H0N0	254 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	SMG9	Q9H0W8	520 aa	Known RBP	18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	SMOC2	Q9H3U7	446 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	POMK	Q9H5K3	350 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	18.4	■□□□□ 0.54	9e-19	■□□□□ 11
CTSB-222	ENST00000531551	CALCOCO1	Q9P1Z2	691 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	HYOU1	Q9Y4L1	999 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	PRUNE2	Q8WUY3	3088 aa		18.4	■□□□□ 0.54
CTSB-222	ENST00000531551	DPYSL4	O14531	572 aa		18.39	■□□□□ 0.54
CTSB-222	ENST00000531551	RNF8	O76064	485 aa		18.39	■□□□□ 0.54
CTSB-222	ENST00000531551	PROSC	O94903	275 aa		18.39	■□□□□ 0.54
CTSB-222	ENST00000531551	MSANTD2	Q6P1R3	559 aa		18.39	■□□□□ 0.54
CTSB-222	ENST00000531551	RNF10	Q8N5U6	811 aa	Known RBP	18.39	■□□□□ 0.54
CTSB-222	ENST00000531551	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	18.39	■□□□□ 0.54
CTSB-222	ENST00000531551	FGF13	Q92913	245 aa		18.39	■□□□□ 0.54
CTSB-222	ENST00000531551	CAPN6	Q9Y6Q1	641 aa		18.39	■□□□□ 0.54
CTSB-222	ENST00000531551	GOLGA6L9	A6NEM1	432 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	PALM	O75781	387 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	IRF1	P10914	325 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	TNNT1	P13805	278 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	SP100	P23497	879 aa	Predicted RBP	18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	GBP2	P32456	591 aa	Predicted RBP	18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	RDX	P35241	583 aa	Known RBP	18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	HADHB	P55084	474 aa	Known RBP	18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	OTUD1	Q5VV17	481 aa	Predicted RBP	18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	SND1	Q7KZF4	910 aa	Known RBP eCLIP	18.39	■□□□□ 0.53	5e-15	■■■■□ 19.9
CTSB-222	ENST00000531551	CPNE8	Q86YQ8	564 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	NPAS3	Q8IXF0	933 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	CMTM8	Q8IZV2	173 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	ZNF276	Q8N554	614 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	NT5C3B	Q969T7	300 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	NECTIN4	Q96NY8	510 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	GKN1	Q9NS71	199 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	CPQ	Q9Y646	472 aa		18.39	■□□□□ 0.53
CTSB-222	ENST00000531551	GRID2IP	A4D2P6	1211 aa		18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	TBX4	P57082	545 aa		18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	ZNF638	Q14966	1978 aa	Known RBP	18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	CC2D1A	Q6P1N0	951 aa	Predicted RBP	18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	KLHDC10	Q6PID8	442 aa		18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	STRADA	Q7RTN6	431 aa		18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	FAM131B	Q86XD5	332 aa		18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	CALR3	Q96L12	384 aa	Known RBP	18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	C5orf42	Q9H799	3197 aa		18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	PIGV	Q9NUD9	493 aa		18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	PCSK1N	Q9UHG2	260 aa		18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	LCMT1	Q9UIC8	334 aa		18.38	■□□□□ 0.53
CTSB-222	ENST00000531551	GRXCR2	A6NFK2	248 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	IRAK2	O43187	625 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	SPOP	O43791	374 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	HDAC4	P56524	1084 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	POTEH	Q6S545	545 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	ST13P5	Q8NFI4	369 aa	Predicted RBP	18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	ALS2CR12	Q96Q35	445 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	ALG6	Q9Y672	507 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	MBTPS2	O43462	519 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	LRCH4	O75427	683 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	OLFM2	O95897	454 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	F9	P00740	461 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	IGLV3-25	P01717	112 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	COMT	P21964	271 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	GJC1	P36383	396 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	COG7	P83436	770 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	SMAD4	Q13485	552 aa	Known RBP	18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	ZC3H12A	Q5D1E8	599 aa	Known RBP	18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	ARID3B	Q8IVW6	561 aa	Predicted RBP	18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	NIPA2	Q8N8Q9	360 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	SUSD6	Q92537	303 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	CENPI	Q92674	756 aa	Predicted RBP	18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	WDCP	Q9H6R7	721 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	ZMYM5	Q9UJ78	669 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	CDH7	Q9ULB5	785 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	TLR6	Q9Y2C9	796 aa		18.37	■□□□□ 0.53
CTSB-222	ENST00000531551	KIF5C	O60282	957 aa		18.36	■□□□□ 0.53
CTSB-222	ENST00000531551	MOCS2	O96007	188 aa	Predicted RBP	18.36	■□□□□ 0.53
CTSB-222	ENST00000531551	PFKL	P17858	780 aa		18.36	■□□□□ 0.53
CTSB-222	ENST00000531551	MIP	P30301	263 aa		18.36	■□□□□ 0.53
CTSB-222	ENST00000531551	KCNQ1	P51787	676 aa		18.36	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms