RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 MYH10P35580 1976 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 PTPRQQ9UMZ3 2332 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 A0A1W2PQF6 199 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 MEI4A8MW99 385 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 F8VP50 259 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 HOXC11O43248 304 aaPredicted RBP11.12□□□□□ -0.63
CPSF1-203ENST00000527916 TULP3O75386 442 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 OLFM2O95897 454 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 ASS1P00966 412 aaKnown RBP11.12□□□□□ -0.63
CPSF1-203ENST00000527916 OAS1P00973 400 aaKnown RBP11.12□□□□□ -0.63
CPSF1-203ENST00000527916 PRB1P04280 392 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 MBL2P11226 248 aaPredicted RBP11.12□□□□□ -0.63
CPSF1-203ENST00000527916 NDUFV2P19404 249 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 NR2F2P24468 414 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 PSMC2P35998 433 aaKnown RBP11.12□□□□□ -0.63
CPSF1-203ENST00000527916 MATKP42679 507 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 WASP42768 502 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 CDH8P55286 799 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 EDRF1Q3B7T1 1238 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 ZCWPW2Q504Y3 356 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 COBLL1Q53SF7 1204 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 C1orf220Q5T0J3 134 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 CEP135Q66GS9 1140 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 ZNF605Q86T29 641 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 UNC93AQ86WB7 457 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 FMR1NBQ8N0W7 255 aaPredicted RBP11.12□□□□□ -0.63
CPSF1-203ENST00000527916 PHTF2Q8N3S3 785 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 PDCD7Q8N8D1 485 aaKnown RBP11.12□□□□□ -0.63
CPSF1-203ENST00000527916 NAT16Q8N8M0 369 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 TERB1Q8NA31 727 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 LSM14AQ8ND56 463 aaKnown RBP11.12□□□□□ -0.63
CPSF1-203ENST00000527916 RHBDD1Q8TEB9 315 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 IPO4Q8TEX9 1081 aaKnown RBP11.12□□□□□ -0.63
CPSF1-203ENST00000527916 FAXDC2Q96IV6 333 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 B3GNT5Q9BYG0 378 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 DPEP3Q9H4B8 488 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 GAREM1Q9H706 876 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 TM7SF3Q9NS93 570 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 COMMD8Q9NX08 183 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 STARD13Q9Y3M8 1113 aa11.12□□□□□ -0.63
CPSF1-203ENST00000527916 E9PAM4 449 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 ATXN7O15265 892 aaPredicted RBP11.11□□□□□ -0.63
CPSF1-203ENST00000527916 FLRT2O43155 660 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 RTN3O95197 1032 aaPredicted RBP11.11□□□□□ -0.63
CPSF1-203ENST00000527916 CD6P30203 668 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 GTF2H1P32780 548 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 USP46P62068 366 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 ADAM9Q13443 819 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 SUZ12Q15022 739 aaKnown RBP11.11□□□□□ -0.63
CPSF1-203ENST00000527916 ANO4Q32M45 955 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 SNX30Q5VWJ9 437 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 GRAMD4Q6IC98 578 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 PAQR9Q6ZVX9 377 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 ETFBKMTQ8IXQ9 262 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 NUP93Q8N1F7 819 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 PDZD8Q8NEN9 1154 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 ENGASEQ8NFI3 743 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 SPATA20Q8TB22 786 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 DNASE2BQ8WZ79 361 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 OVCA2Q8WZ82 227 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 DCBLD2Q96PD2 775 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 GSDMAQ96QA5 445 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 GTPBP4Q9BZE4 634 aaKnown RBP11.11□□□□□ -0.63
CPSF1-203ENST00000527916 SDCBP2Q9H190 292 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 SMYD3Q9H7B4 428 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 PRDM16Q9HAZ2 1276 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 GDPD2Q9HCC8 539 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 RMND1Q9NWS8 449 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 IL37Q9NZH6 218 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 MAPK8IP1Q9UQF2 711 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 SH3BP1Q9Y3L3 701 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 PCDHGB2Q9Y5G2 931 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 MGAQ8IWI9 3026 aa11.11□□□□□ -0.63
CPSF1-203ENST00000527916 ATP8B3O60423 1300 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 ATMQ13315 3056 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 FAM92AA1XBS5 289 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 GOLGA6L4A6NEF3 574 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 CAPN8A6NHC0 703 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 GOLGA8CPA6NN73 597 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 CLDN5O00501 218 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 CAPN9O14815 690 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 CILPO75339 1184 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 DKK1O94907 266 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 ATXN1LP0C7T5 689 aaKnown RBP11.1□□□□□ -0.63
CPSF1-203ENST00000527916 KRT13P13646 458 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 PLA2G2AP14555 144 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 MAOBP27338 520 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 YWHAQP27348 245 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 CACNA2D1P54289 1103 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 TAF10Q12962 218 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 EGFLAMQ63HQ2 1017 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 KIAA1324Q6UXG2 1013 aaKnown RBP11.1□□□□□ -0.63
CPSF1-203ENST00000527916 LRRC69Q6ZNQ3 347 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 ELOA2Q8IYF1 753 aaPredicted RBP11.1□□□□□ -0.63
CPSF1-203ENST00000527916 FAM186BQ8IYM0 893 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 ZCCHC9Q8N567 271 aaKnown RBP11.1□□□□□ -0.63
CPSF1-203ENST00000527916 CADM4Q8NFZ8 388 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 PIP4K2CQ8TBX8 421 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 CRELD1Q96HD1 420 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 MRGPRX1Q96LB2 322 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms