RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 PENKP01210 267 aaPredicted RBP15.04■□□□□ -0
CPSF1-201ENST00000526271 HLA-DRAP01903 254 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 RARGP13631 454 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 KIF11P52732 1056 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 COPAP53621 1224 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 MFAP3P55082 362 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 BYSLQ13895 437 aaKnown RBP15.04■□□□□ -0
CPSF1-201ENST00000526271 BECN1Q14457 450 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 BHLHA9Q7RTU4 235 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 TRMT11Q7Z4G4 463 aaKnown RBP15.04■□□□□ -0
CPSF1-201ENST00000526271 PROSER1Q86XN7 944 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 MARCH9Q86YJ5 346 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 DNASE2BQ8WZ79 361 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 LRRC27Q9C0I9 530 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 TLR8Q9NR97 1041 aaKnown RBP15.04■□□□□ -0
CPSF1-201ENST00000526271 WSB2Q9NYS7 404 aaPredicted RBP15.04■□□□□ -0
CPSF1-201ENST00000526271 SERTAD1Q9UHV2 236 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 LHX6Q9UPM6 363 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 USP3Q9Y6I4 520 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 STON1Q9Y6Q2 735 aa15.04■□□□□ -0
CPSF1-201ENST00000526271 ASXL3Q9C0F0 2248 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 ATP8B3O60423 1300 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 FTH1P19P0C7X4 201 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 ATP5C1P36542 298 aaKnown RBP15.03■□□□□ -0
CPSF1-201ENST00000526271 DGKGP49619 791 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 AMPD3Q01432 767 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 PPP3CAQ08209 521 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 SCAPQ12770 1279 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 KMT5BQ4FZB7 885 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 KLHDC10Q6PID8 442 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 UNC93AQ86WB7 457 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 BAHD1Q8TBE0 780 aaPredicted RBP15.03■□□□□ -0
CPSF1-201ENST00000526271 TAS1R2Q8TE23 839 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 ADAMTS14Q8WXS8 1223 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 SORCS1Q8WY21 1168 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 TOE1Q96GM8 510 aaKnown RBP15.03■□□□□ -0
CPSF1-201ENST00000526271 PAGE5Q96GU1 130 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 PIWIL1Q96J94 861 aaKnown RBP15.03■□□□□ -0
CPSF1-201ENST00000526271 CGNQ9P2M7 1197 aaKnown RBP15.03■□□□□ -0
CPSF1-201ENST00000526271 THAP10Q9P2Z0 257 aaPredicted RBP15.03■□□□□ -0
CPSF1-201ENST00000526271 SLC27A6Q9Y2P4 619 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 GPSM3Q9Y4H4 160 aa15.03■□□□□ -0
CPSF1-201ENST00000526271 ZNF217O75362 1048 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 DKK1O94907 266 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 NR3C1P04150 777 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 FAM200BP0CF97 657 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 TRIM49P0CI25 452 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 TRIM49CP0CI26 452 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 PRKCHP24723 683 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 DPP6P42658 865 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 TRIP6Q15654 476 aaKnown RBP15.02■□□□□ -0
CPSF1-201ENST00000526271 SGSM1Q2NKQ1 1148 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 PLEKHG6Q3KR16 790 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 PPP1R26Q5T8A7 1209 aaPredicted RBP15.02■□□□□ -0
CPSF1-201ENST00000526271 METTL3Q86U44 580 aaKnown RBP15.02■□□□□ -0
CPSF1-201ENST00000526271 HDDC3Q8N4P3 179 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 TMC2Q8TDI7 906 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 NDRG1Q92597 394 aaKnown RBP15.02■□□□□ -0
CPSF1-201ENST00000526271 SEMA4DQ92854 862 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 CYFIP2Q96F07 1278 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 FBXO44Q9H4M3 255 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 MAGEF1Q9HAY2 307 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 WDR35Q9P2L0 1181 aa15.02■□□□□ -0
CPSF1-201ENST00000526271 FNDC3AQ9Y2H6 1198 aaKnown RBP15.02■□□□□ -0
CPSF1-201ENST00000526271 PLXNA2O75051 1894 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 URB1O60287 2271 aaKnown RBP15.01□□□□□ -0.01
CPSF1-201ENST00000526271 TULP2O00295 520 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 GFRA2O00451 464 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 CILPO75339 1184 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 PRR29P0C7W0 189 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 TPMTP51580 245 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 AP3M2P53677 418 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 ATXN3P54252 364 aaPredicted RBP15.01□□□□□ -0.01
CPSF1-201ENST00000526271 MCCD1P59942 119 aaPredicted RBP15.01□□□□□ -0.01
CPSF1-201ENST00000526271 KIAA1324Q6UXG2 1013 aaKnown RBP15.01□□□□□ -0.01
CPSF1-201ENST00000526271 CCNI2Q6ZMN8 369 aaPredicted RBP15.01□□□□□ -0.01
CPSF1-201ENST00000526271 CCDC186Q7Z3E2 898 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 NAXDQ8IW45 347 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 ZC3H3Q8IXZ2 948 aaKnown RBP15.01□□□□□ -0.01
CPSF1-201ENST00000526271 ZNF276Q8N554 614 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 ZCCHC9Q8N567 271 aaKnown RBP15.01□□□□□ -0.01
CPSF1-201ENST00000526271 XPO6Q96QU8 1125 aaKnown RBP15.01□□□□□ -0.01
CPSF1-201ENST00000526271 GPR174Q9BXC1 333 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 NACA2Q9H009 215 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 ITM2CQ9NQX7 267 aa15.01□□□□□ -0.01
CPSF1-201ENST00000526271 AGO1Q9UL18 857 aaKnown RBP15.01□□□□□ -0.01
CPSF1-201ENST00000526271 IGLV3-19P01714 112 aa15□□□□□ -0.01
CPSF1-201ENST00000526271 RPN1P04843 607 aaKnown RBP15□□□□□ -0.01
CPSF1-201ENST00000526271 HMBSP08397 361 aa15□□□□□ -0.01
CPSF1-201ENST00000526271 C7P10643 843 aa15□□□□□ -0.01
CPSF1-201ENST00000526271 CD6P30203 668 aa15□□□□□ -0.01
CPSF1-201ENST00000526271 ANP32AP39687 249 aaKnown RBP15□□□□□ -0.01
CPSF1-201ENST00000526271 PLA2G4AP47712 749 aa15□□□□□ -0.01
CPSF1-201ENST00000526271 ZNF423Q2M1K9 1284 aa15□□□□□ -0.01
CPSF1-201ENST00000526271 C10orf120Q5SQS8 335 aa15□□□□□ -0.01
CPSF1-201ENST00000526271 C19orf48Q6RUI8 117 aa15□□□□□ -0.01
CPSF1-201ENST00000526271 DBX2Q6ZNG2 339 aa15□□□□□ -0.01
CPSF1-201ENST00000526271 CACUL1Q86Y37 369 aa15□□□□□ -0.01
CPSF1-201ENST00000526271 FAM217AQ8IXS0 508 aa15□□□□□ -0.01
CPSF1-201ENST00000526271 RGL4Q8IZJ4 473 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms