RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SERPINB11Q96P15 392 aa30.9■■■□□ 2.54
LIMCH1-211ENST00000509638 KLF16Q9BXK1 252 aaPredicted RBP30.9■■■□□ 2.54
LIMCH1-211ENST00000509638 GKN1Q9NS71 199 aa30.9■■■□□ 2.54
LIMCH1-211ENST00000509638 LIMD1Q9UGP4 676 aa30.9■■■□□ 2.54
LIMCH1-211ENST00000509638 STAP1Q9ULZ2 295 aa30.9■■■□□ 2.54
LIMCH1-211ENST00000509638 SLC12A8A0AV02 714 aa30.89■■■□□ 2.54
LIMCH1-211ENST00000509638 C2CD4BA6NLJ0 364 aa30.89■■■□□ 2.54
LIMCH1-211ENST00000509638 LEFTY2O00292 366 aa30.89■■■□□ 2.54
LIMCH1-211ENST00000509638 CYP1A2P05177 515 aa30.89■■■□□ 2.54
LIMCH1-211ENST00000509638 TMEM253P0C7T8 217 aa30.89■■■□□ 2.54
LIMCH1-211ENST00000509638 CCDC173Q0VFZ6 552 aa30.89■■■□□ 2.54
LIMCH1-211ENST00000509638 ZNF77Q15935 545 aa30.89■■■□□ 2.54
LIMCH1-211ENST00000509638 ACRBPQ8NEB7 543 aa30.89■■■□□ 2.54
LIMCH1-211ENST00000509638 ELSPBP1Q96BH3 223 aa30.89■■■□□ 2.54
LIMCH1-211ENST00000509638 MRPL47Q9HD33 250 aaKnown RBP30.89■■■□□ 2.54
LIMCH1-211ENST00000509638 MYO10Q9HD67 2058 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 HEPACAM2A8MVW5 462 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 TRUB2O95900 331 aaKnown RBP30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 HMBSP08397 361 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 SULT1E1P49888 294 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 CCZ1BP86790 482 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 CCZ1P86791 482 aaPredicted RBP30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 OTUD1Q5VV17 481 aaPredicted RBP30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 DDX42Q86XP3 938 aaKnown RBP eCLIP30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 ADAMTS19Q8TE59 1207 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 RXFP2Q8WXD0 754 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 RSAD2Q8WXG1 361 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 DDX23Q9BUQ8 820 aaKnown RBP30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 LUC7LQ9NQ29 371 aaKnown RBP30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 DDIT4Q9NX09 232 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 CFAP97Q9P2B7 532 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 ARHGAP6O43182 974 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 ECI2O75521 394 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 IGLV3-25P01717 112 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 PDGFRAP16234 1089 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 TFE3P19532 575 aaPredicted RBP30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 SDC4P31431 198 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 MAGEA1P43355 309 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 TJAP1Q5JTD0 557 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 VITQ6UXI7 678 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 E2F7Q96AV8 911 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 LRRC3BQ96PB8 259 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 NPY6RQ99463 290 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 DESI2Q9BSY9 194 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 NUP85Q9BW27 656 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 ADAM33Q9BZ11 813 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 OBP2AQ9NY56 170 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 RRN3Q9NYV6 651 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 REXO2Q9Y3B8 237 aaKnown RBP30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 HBS1LQ9Y450 684 aaKnown RBP30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 PCDHA13Q9Y5I0 950 aa30.88■■■□□ 2.53
LIMCH1-211ENST00000509638 SYNJ2BP-COX16A0A087WUM0 186 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 IRAK2O43187 625 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 NRDCO43847 1150 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 GPD1P21695 349 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 COG7P83436 770 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 SLC25A52Q3SY17 297 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 NT5C3BQ969T7 300 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 TBCBQ99426 244 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 RPP25Q9BUL9 199 aaKnown RBP30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 TRIM7Q9C029 511 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 KCNK12Q9HB15 430 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 COX16Q9P0S2 106 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 INTUQ9ULD6 942 aa30.87■■■□□ 2.53
LIMCH1-211ENST00000509638 TRIOO75962 3097 aa30.86■■■□□ 2.53
LIMCH1-211ENST00000509638 M0QYT0 321 aa30.86■■■□□ 2.53
LIMCH1-211ENST00000509638 SCAMP3O14828 347 aaKnown RBP30.86■■■□□ 2.53
LIMCH1-211ENST00000509638 ASGR2P07307 311 aa30.86■■■□□ 2.53
LIMCH1-211ENST00000509638 TCF3P15923 654 aa30.86■■■□□ 2.53
LIMCH1-211ENST00000509638 NNTQ13423 1086 aa30.86■■■□□ 2.53
LIMCH1-211ENST00000509638 TRIP4Q15650 581 aaPredicted RBP30.86■■■□□ 2.53
LIMCH1-211ENST00000509638 PLA2G2FQ9BZM2 168 aa30.86■■■□□ 2.53
LIMCH1-211ENST00000509638 CALCOCO1Q9P1Z2 691 aa30.86■■■□□ 2.53
LIMCH1-211ENST00000509638 C19orf67A6NJJ6 358 aa30.85■■■□□ 2.53
LIMCH1-211ENST00000509638 STC2O76061 302 aa30.85■■■□□ 2.53
LIMCH1-211ENST00000509638 NME3Q13232 169 aa30.85■■■□□ 2.53
LIMCH1-211ENST00000509638 GRM2Q14416 872 aa30.85■■■□□ 2.53
LIMCH1-211ENST00000509638 BPIFB1Q8TDL5 484 aa30.85■■■□□ 2.53
LIMCH1-211ENST00000509638 WBP2Q969T9 261 aa30.85■■■□□ 2.53
LIMCH1-211ENST00000509638 PLD4Q96BZ4 506 aa30.85■■■□□ 2.53
LIMCH1-211ENST00000509638 CTTNBP2NLQ9P2B4 639 aa30.85■■■□□ 2.53
LIMCH1-211ENST00000509638 TLR6Q9Y2C9 796 aa30.85■■■□□ 2.53
LIMCH1-211ENST00000509638 SH3BP1Q9Y3L3 701 aa30.85■■■□□ 2.53
LIMCH1-211ENST00000509638 TMEM191CA6NGB0 347 aa30.84■■■□□ 2.53
LIMCH1-211ENST00000509638 PTPN9P43378 593 aa30.84■■■□□ 2.53
LIMCH1-211ENST00000509638 TBX4P57082 545 aa30.84■■■□□ 2.53
LIMCH1-211ENST00000509638 ATP11AP98196 1134 aa30.84■■■□□ 2.53
LIMCH1-211ENST00000509638 OGDHQ02218 1023 aa30.84■■■□□ 2.53
LIMCH1-211ENST00000509638 CDO1Q16878 200 aa30.84■■■□□ 2.53
LIMCH1-211ENST00000509638 C15orf59Q2T9L4 293 aaPredicted RBP30.84■■■□□ 2.53
LIMCH1-211ENST00000509638 CCDC14Q49A88 953 aa30.84■■■□□ 2.53
LIMCH1-211ENST00000509638 PPP1R9BQ96SB3 815 aa30.84■■■□□ 2.53
LIMCH1-211ENST00000509638 IGSF9Q9P2J2 1179 aa30.84■■■□□ 2.53
LIMCH1-211ENST00000509638 TFR2Q9UP52 801 aa30.84■■■□□ 2.53
LIMCH1-211ENST00000509638 IGLV3-27P01718 113 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 KPNA1P52294 538 aaPredicted RBP30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 ZNF143P52747 638 aaPredicted RBP30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 MFSD6LQ8IWD5 586 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 ZNF564Q8TBZ8 553 aaPredicted RBP30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 DEPDC1BQ8WUY9 529 aa30.83■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms