RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FAM83DQ9H4H8 585 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 HIF1ANQ9NWT6 349 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 IP6K2Q9UHH9 426 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 RIMKLBQ9ULI2 386 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 TTC34A8MYJ7 566 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 PYCARD-AS1I3L0S3 204 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 UGDHO60701 494 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 UBXN7O94888 489 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 CAMTA2O94983 1202 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 SLC3A2P08195 630 aaKnown RBP3.43□□□□□ -1.86
NUP54-208ENST00000508604 TMEM225BP0DP42 221 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 HSPA6P17066 643 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 TPH1P17752 444 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 HOXA7P31268 230 aaPredicted RBP3.43□□□□□ -1.86
NUP54-208ENST00000508604 ARRB2P32121 409 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 AMPD3Q01432 767 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 LTBQ06643 244 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 DLGAP5Q15398 846 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 CNGA3Q16281 694 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 MZT2AQ6P582 158 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 CUZD1Q86UP6 607 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 OR56A3Q8NH54 315 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 WBP1Q96G27 269 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 HTATIP2Q9BUP3 242 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 ZMAT3Q9HA38 289 aaKnown RBP3.43□□□□□ -1.86
NUP54-208ENST00000508604 AASDHPPTQ9NRN7 309 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 TRBV5-3A0A0A0MS03 114 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 PRAMEF2O60811 474 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 INMTO95050 263 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 TMIGD3P0DMS9 266 aaPredicted RBP3.42□□□□□ -1.86
NUP54-208ENST00000508604 HOXB2P14652 356 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 ST6GAL1P15907 406 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 GALNSP34059 522 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 EGR4Q05215 589 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 KEAP1Q14145 624 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 ZNF267Q14586 743 aaPredicted RBP3.42□□□□□ -1.86
NUP54-208ENST00000508604 CLCA4Q14CN2 919 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 CLEC9AQ6UXN8 241 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 NT5C1BQ96P26 610 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 SACM1LQ9NTJ5 587 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 AGO2Q9UKV8 859 aaKnown RBP3.42□□□□□ -1.86
NUP54-208ENST00000508604 ICAM5Q9UMF0 924 aa3.42□□□□□ -1.86
NUP54-208ENST00000508604 TRIP12Q14669 1992 aaPredicted RBP3.42□□□□□ -1.86
NUP54-208ENST00000508604 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.41□□□□□ -1.86
NUP54-208ENST00000508604 RAB27BO00194 218 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 CA12O43570 354 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 VPS41P49754 854 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 CPT1AP50416 773 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 ANO6Q4KMQ2 910 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 NADSYN1Q6IA69 706 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 YAF2Q8IY57 180 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 FSTL5Q8N475 847 aaPredicted RBP3.41□□□□□ -1.86
NUP54-208ENST00000508604 METTL25Q8N6Q8 603 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 OIT3Q8WWZ8 545 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 CENPIQ92674 756 aaPredicted RBP3.41□□□□□ -1.86
NUP54-208ENST00000508604 P2RY11Q96G91 374 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 MOV10Q9HCE1 1003 aaKnown RBP3.41□□□□□ -1.86
NUP54-208ENST00000508604 AGO4Q9HCK5 861 aaKnown RBP3.41□□□□□ -1.86
NUP54-208ENST00000508604 NMRK2Q9NPI5 230 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 CD93Q9NPY3 652 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 THSD1Q9NS62 852 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 DNAJB11Q9UBS4 358 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 GABBR1Q9UBS5 961 aa3.41□□□□□ -1.86
NUP54-208ENST00000508604 ERRFI1Q9UJM3 462 aaPredicted RBP3.41□□□□□ -1.86
NUP54-208ENST00000508604 A0A1W2PPC1 479 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 RPS10-NUDT3A0A1W2PQS6 291 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 H0YGN5 161 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 AGPSO00116 658 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 TNFRSF13BO14836 293 aaPredicted RBP3.4□□□□□ -1.86
NUP54-208ENST00000508604 LINC01565O15544 149 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 PAPSS2O95340 614 aaPredicted RBP3.4□□□□□ -1.86
NUP54-208ENST00000508604 ACVR2AP27037 513 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 RBL1P28749 1068 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 USP49Q70CQ1 688 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 TFAP2DQ7Z6R9 452 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 ELP5Q8TE02 316 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 IPCEF1Q8WWN9 437 aaPredicted RBP3.4□□□□□ -1.86
NUP54-208ENST00000508604 SENP7Q9BQF6 1050 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 SLC12A5Q9H2X9 1139 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 HOMER2Q9NSB8 354 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 PLK2Q9NYY3 685 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 SEMA5BQ9P283 1151 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 SLC27A6Q9Y2P4 619 aa3.4□□□□□ -1.86
NUP54-208ENST00000508604 BRAFP15056 766 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 ZKSCAN1P17029 563 aaPredicted RBP3.39□□□□□ -1.87
NUP54-208ENST00000508604 DGKQP52824 942 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 SUMO3P55854 103 aaPredicted RBP3.39□□□□□ -1.87
NUP54-208ENST00000508604 HILS1P60008 231 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 WASHC2DQ5SRD0 308 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 OTUD3Q5T2D3 398 aaPredicted RBP3.39□□□□□ -1.87
NUP54-208ENST00000508604 MORC1Q86VD1 984 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 MICU3Q86XE3 530 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.39□□□□□ -1.87
NUP54-208ENST00000508604 IL31RAQ8NI17 732 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 MAML1Q92585 1016 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 TTLL2Q9BWV7 592 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 RNF26Q9BY78 433 aaPredicted RBP3.39□□□□□ -1.87
NUP54-208ENST00000508604 MLXIPLQ9NP71 852 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 VPS45Q9NRW7 570 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 DDX56Q9NY93 547 aaKnown RBP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms