RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 COQ4Q9Y3A0 265 aa18.91■□□□□ 0.62
SQSTM1-209ENST00000504627 TBC1D3BA6NDS4 549 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 MFAP3LO75121 409 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 RALAP11233 206 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 PON1P27169 355 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 PSEN1P49768 467 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 KLK7P49862 253 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 RAD23BP54727 409 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 YWHAEP62258 255 aaKnown RBP18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 CSRP2Q16527 193 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 HS1BP3Q53T59 392 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 C10orf120Q5SQS8 335 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 TRIM65Q6PJ69 517 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 PRR23CQ6ZRP0 262 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 CCDC186Q7Z3E2 898 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 TTC30AQ86WT1 665 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 TMEM25Q86YD3 366 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 WBP2Q969T9 261 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 LOXL4Q96JB6 756 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 CRACR2AQ9BSW2 395 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 INTS2Q9H0H0 1204 aaKnown RBP18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 ARRDC1-AS1Q9H2J1 176 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 NMUR1Q9HB89 426 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 FAM207AQ9NSI2 230 aaPredicted RBP18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 DEC1Q9P2X7 70 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 EBF1Q9UH73 591 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 DNMT3LQ9UJW3 386 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 NUDT5Q9UKK9 219 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 MMP17Q9ULZ9 603 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 SDK1Q7Z5N4 2213 aa18.9■□□□□ 0.62
SQSTM1-209ENST00000504627 ANTXRLA6NF34 631 aa18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 AKR1B15C9JRZ8 316 aaPredicted RBP18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 FOXD2O60548 495 aaPredicted RBP18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 TNFRSF4P43489 277 aa18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 PLA2G4AP47712 749 aa18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 USP39Q53GS9 565 aaKnown RBP18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 HTR3DQ70Z44 454 aa18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 ALLCQ8N6M5 410 aa18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 TXNDC5Q8NBS9 432 aaKnown RBP18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 CDK5RAP1Q96SZ6 601 aaKnown RBP18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 TPSD1Q9BZJ3 242 aa18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 GANQ9H2C0 597 aa18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 CAPN11Q9UMQ6 739 aa18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 DNAH14Q0VDD8 3507 aa18.89■□□□□ 0.61
SQSTM1-209ENST00000504627 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 MDM4O15151 490 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 HOXC11O43248 304 aaPredicted RBP18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 TULP3O75386 442 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 ALDH1A2O94788 518 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 KLF8O95600 359 aaPredicted RBP18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 GBP1P32455 592 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 ATXN1P54253 815 aaKnown RBP18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 MESP2Q0VG99 397 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 LRMPQ12912 555 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 CUL2Q13617 745 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 ELF2Q15723 593 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 CRY1Q16526 586 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 HSF5Q4G112 596 aaPredicted RBP18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 ARHGAP17Q68EM7 881 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 ANO7Q6IWH7 933 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 KLHDC10Q6PID8 442 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 MIB1Q86YT6 1006 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 SFTPA1Q8IWL2 248 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 TRIM44Q96DX7 344 aaPredicted RBP18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 XPO6Q96QU8 1125 aaKnown RBP18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 RTKNQ9BST9 563 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 BBS2Q9BXC9 721 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 POLMQ9NP87 494 aaPredicted RBP18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 USP3Q9Y6I4 520 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 MYO16Q9Y6X6 1858 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 MYOFQ9NZM1 2061 aa18.88■□□□□ 0.61
SQSTM1-209ENST00000504627 A0A0A0MRY4 1105 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 NEDD8-MDP1E9PL57 170 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 RHOBTB1O94844 696 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 EPN2O95208 641 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 CD19P15391 556 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 TBXAS1P24557 533 aaPredicted RBP18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 CASP14P31944 242 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 ZBED6P86452 979 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 ARID5BQ14865 1188 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 CCDC6Q16204 474 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 PLK5Q496M5 336 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 AASDHQ4L235 1098 aaPredicted RBP18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 SGO2Q562F6 1265 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 EOGTQ5NDL2 527 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 EMC10Q5UCC4 262 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 DPY19L2P1Q6NXN4 242 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 TPGS1Q6ZTW0 290 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 PIGZQ86VD9 579 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 ETFBKMTQ8IXQ9 262 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 ARHGAP18Q8N392 663 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 TC2NQ8N9U0 490 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 C12orf50Q8NA57 414 aaPredicted RBP18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 IL17RCQ8NAC3 791 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 ANKRD52Q8NB46 1076 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 EHBP1Q8NDI1 1231 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 LMO3Q8TAP4 145 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 NETO1Q8TDF5 533 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 ZC3H10Q96K80 434 aaKnown RBP18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms