RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 ASTE1Q2TB18 679 aaPredicted RBP12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 ARHGAP29Q52LW3 1261 aa12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 C2CD6Q53TS8 623 aa12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 MCOLN2Q8IZK6 566 aa12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 SLC2A13Q96QE2 648 aa12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 C11orf70Q9BRQ4 267 aa12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 ISCUQ9H1K1 167 aa12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 GKN1Q9NS71 199 aa12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 THG1LQ9NWX6 298 aaKnown RBP12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 SMPD4Q9NXE4 827 aa12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 TAS2R14Q9NYV8 317 aa12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 DUSP12Q9UNI6 340 aa12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 NAALADL1Q9UQQ1 740 aa12.44□□□□□ -0.42
PDLIM5-208ENST00000504489 A0A087X0T9 212 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 E2F8A0AVK6 867 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 CAPN9O14815 690 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 MDM4O15151 490 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 CHADO15335 359 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 DAB1O75553 588 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 FTLP02792 175 aaPredicted RBP12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 FAM228BP0C875 321 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 SRFP11831 508 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 NOS2P35228 1153 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 KPNA1P52294 538 aaPredicted RBP12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 MTF1Q14872 753 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 FAM102AQ5T9C2 384 aaPredicted RBP12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 SYPL2Q5VXT5 272 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 MIB1Q86YT6 1006 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 YAF2Q8IY57 180 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 UBALD2Q8IYN6 164 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 DEFB106AQ8N104 65 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 C3orf20Q8ND61 904 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 RIN3Q8TB24 985 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 PANX2Q96RD6 677 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 CHP1Q99653 195 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 SMOC2Q9H3U7 446 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 TRPV5Q9NQA5 729 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 SLC2A4RGQ9NR83 387 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 RRN3Q9NYV6 651 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 CFAP97Q9P2B7 532 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 MUTYHQ9UIF7 546 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 RASAL2Q9UJF2 1139 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 TMEM59LQ9UK28 342 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 NENFQ9UMX5 172 aa12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 HBS1LQ9Y450 684 aaKnown RBP12.43□□□□□ -0.42
PDLIM5-208ENST00000504489 COL4A3Q01955 1670 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 TCRBV5S1A1TA0A578 114 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 SLC12A8A0AV02 714 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 FAM170AA1A519 330 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 SIGLEC16A6NMB1 481 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 TMCO5BA8MYB1 307 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 GOLGA8SH3BPF8 625 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 SLC9A3R1O14745 358 aaPredicted RBP12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 ZNF263O14978 683 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 GRAP2O75791 330 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 STC2O76061 302 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 IGLV3-25P01717 112 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 FECHP22830 423 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 GDI1P31150 447 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 MATKP42679 507 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 GPC5P78333 572 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 NNTQ13423 1086 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 GRM2Q14416 872 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 TRIP4Q15650 581 aaPredicted RBP12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 SLC18A3Q16572 532 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 DCAF6Q58WW2 860 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 CC2D1AQ6P1N0 951 aaPredicted RBP12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 ALKBH5Q6P6C2 394 aaKnown RBP12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 HTR3DQ70Z44 454 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 DQX1Q8TE96 717 aaKnown RBP12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 OSCP1Q8WVF1 389 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 IRF7Q92985 503 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 TRIM11Q96F44 468 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 FAM83CQ9BQN1 747 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 DDX23Q9BUQ8 820 aaKnown RBP12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 COL25A1Q9BXS0 654 aaPredicted RBP12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 DCLK3Q9C098 648 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 BRD9Q9H8M2 597 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 NHEJ1Q9H9Q4 299 aaPredicted RBP12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 TMEM51Q9NW97 253 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 TBC1D14Q9P2M4 693 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 SFMBT1Q9UHJ3 866 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 SH3BP1Q9Y3L3 701 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 NUP205Q92621 2012 aa12.42□□□□□ -0.42
PDLIM5-208ENST00000504489 ARNTLO00327 626 aa12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 ARHGAP33O14559 1287 aa12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 DCXO43602 365 aa12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 NARSO43776 548 aaKnown RBP12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 AKR1B10O60218 316 aa12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 GREM1O60565 184 aa12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 TRUB2O95900 331 aaKnown RBP12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 IGLV3-27P01718 113 aa12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 MYBL1P10243 752 aa12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 IRF1P10914 325 aa12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 RRM1P23921 792 aa12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 MRE11P49959 708 aa12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 RNASE9P60153 205 aaKnown RBP12.41□□□□□ -0.42
PDLIM5-208ENST00000504489 ZXDAP98168 799 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms