RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ABL2P42684 1182 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 BCAR1P56945 870 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TAF11Q15544 211 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 FAM110CQ1W6H9 321 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 HSF5Q4G112 596 aaPredicted RBP16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PKDCCQ504Y2 493 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 BOLA3Q53S33 107 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CES4AQ5XG92 561 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PMF1Q6P1K2 205 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SCYL2Q6P3W7 929 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MAP7D3Q8IWC1 876 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TEKT4Q8WW24 435 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TUBB6Q9BUF5 446 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SNRNP25Q9BV90 132 aaKnown RBP16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 FRMD8Q9BZ67 464 aaPredicted RBP16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 UGT1A7Q9HAW7 530 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 UGT1A10Q9HAW8 530 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 UGT1A8Q9HAW9 530 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ZC3H7BQ9UGR2 993 aaKnown RBP16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CITO14578 2027 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PLXNA1Q9UIW2 1896 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TRDMT1O14717 391 aaKnown RBP16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 STAU1O95793 577 aaKnown RBP16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SNRPAP09012 282 aaKnown RBP16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 INSRRP14616 1297 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CCNFP41002 786 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MRPS5P82675 430 aaKnown RBP16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 KRT72Q14CN4 511 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 GOLGA7BQ2TAP0 167 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 DSTYKQ6XUX3 929 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 RINLQ6ZS11 566 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ZNF534Q76KX8 674 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TTC7BQ86TV6 843 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CTAGE3PQ8IX95 158 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 FAM172AQ8WUF8 416 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 NAF1Q96HR8 494 aaKnown RBP16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MPHOSPH6Q99547 160 aaKnown RBP16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 DPP3Q9NY33 737 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 KIAA1257Q9ULG3 409 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SLC45A1Q9Y2W3 748 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PLLPQ9Y342 182 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SCN1AP35498 2009 aa16.67■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 FAM237BA0A1B0GVD1 139 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SLC15A5A6NIM6 579 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 H0Y3Z8 333 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SLC25A27O95847 323 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ZBED1O96006 694 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MYL2P10916 166 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 RBP5P82980 135 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 KHDC1Q4VXA5 237 aaKnown RBP16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PPP1R26Q5T8A7 1209 aaPredicted RBP16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TTC30AQ86WT1 665 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CCDC110Q8TBZ0 833 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MECRQ9BV79 373 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 NT5C1AQ9BXI3 368 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 NGRNQ9NPE2 291 aaKnown RBP16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ITGA11Q9UKX5 1188 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 NME7Q9Y5B8 376 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 APRTP07741 180 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CSH1P0DML2 217 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CSH2P0DML3 217 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CYP2B6P20813 491 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MAGEA3P43357 314 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 KCTD2Q14681 263 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CCL14Q16627 93 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 UNC5AQ6ZN44 842 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MCUQ8NE86 351 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SIGLEC10Q96LC7 697 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TRIM56Q9BRZ2 755 aaKnown RBP16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SLC4A5Q9BY07 1137 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MIS12Q9H081 205 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ARHGEF4Q9NR80 690 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CPSF2Q9P2I0 782 aaKnown RBP16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 GABRQQ9UN88 632 aa16.66■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 HMX2A2RU54 273 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 KRT37O76014 449 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 METTL18O95568 372 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 APOEP02649 317 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TFE3P19532 575 aaPredicted RBP16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PTDSS1P48651 473 aaKnown RBP16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 HDAC4P56524 1084 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SLC6A3Q01959 620 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ZNF484Q5JVG2 852 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 FAM91A1Q658Y4 838 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 OXNAD1Q96HP4 312 aaPredicted RBP16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 KLC2Q9H0B6 622 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CXCL16Q9H2A7 254 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TAS2R1Q9NYW7 299 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ERAP1Q9NZ08 941 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MORF4L1Q9UBU8 362 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 C2CD2Q9Y426 696 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 FCHO1O14526 889 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 VTNP04004 478 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ZBTB16Q05516 673 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SLC10A2Q12908 348 aaPredicted RBP16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 BLMHQ13867 455 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 BMPR2Q13873 1038 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PDCD2Q16342 344 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms