RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 MRPL47Q9HD33 250 aaKnown RBP12.42□□□□□ -0.42
CUX1-210ENST00000497815 DDIT4Q9NX09 232 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 CFAP97Q9P2B7 532 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 STAP1Q9ULZ2 295 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 ARHGAP26Q9UNA1 814 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 TFR2Q9UP52 801 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 PCDHA13Q9Y5I0 950 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 NUMBLQ9Y6R0 609 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 SCINQ9Y6U3 715 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 HEPACAM2A8MVW5 462 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 LOC730098B7Z3J9 87 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 M0QYT0 321 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 NRDCO43847 1150 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 TRUB2O95900 331 aaKnown RBP12.41□□□□□ -0.42
CUX1-210ENST00000497815 CYP1A2P05177 515 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 ASGR2P07307 311 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 TMEM253P0C7T8 217 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 GPD1P21695 349 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 SDC4P31431 198 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 CCZ1BP86790 482 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 CCZ1P86791 482 aaPredicted RBP12.41□□□□□ -0.42
CUX1-210ENST00000497815 HTR4Q13639 388 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 CDO1Q16878 200 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 C15orf59Q2T9L4 293 aaPredicted RBP12.41□□□□□ -0.42
CUX1-210ENST00000497815 C10orf76Q5T2E6 689 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 BEND5Q7L4P6 421 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 ZDHHC14Q8IZN3 488 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 CELF5Q8N6W0 485 aaKnown RBP12.41□□□□□ -0.42
CUX1-210ENST00000497815 RIN3Q8TB24 985 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 PRUNE2Q8WUY3 3088 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 WBP2Q969T9 261 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 ZNF830Q96NB3 372 aaPredicted RBP12.41□□□□□ -0.42
CUX1-210ENST00000497815 LRRC3BQ96PB8 259 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 TBCBQ99426 244 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 DDX23Q9BUQ8 820 aaKnown RBP12.41□□□□□ -0.42
CUX1-210ENST00000497815 NUP85Q9BW27 656 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 TRIM7Q9C029 511 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 KIF9Q9HAQ2 790 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 TRPV4Q9HBA0 871 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 LUC7LQ9NQ29 371 aaKnown RBP12.41□□□□□ -0.42
CUX1-210ENST00000497815 CTTNBP2NLQ9P2B4 639 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 PRKAG3Q9UGI9 489 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 REXO2Q9Y3B8 237 aaKnown RBP12.41□□□□□ -0.42
CUX1-210ENST00000497815 SH3BP1Q9Y3L3 701 aa12.41□□□□□ -0.42
CUX1-210ENST00000497815 TMEM191CA6NGB0 347 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 C2CD4BA6NLJ0 364 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 ANHXE9PGG2 379 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 ARHGAP6O43182 974 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 WEE1P30291 646 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 GBP1P32455 592 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 TBX4P57082 545 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 COG7P83436 770 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 OGDHQ02218 1023 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 TRIP4Q15650 581 aaPredicted RBP12.4□□□□□ -0.42
CUX1-210ENST00000497815 ZNF77Q15935 545 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 SLC25A52Q3SY17 297 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 CCDC14Q49A88 953 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 RAB6CQ53S08 254 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 SH3PXD2AQ5TCZ1 1133 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 OTUD1Q5VV17 481 aaPredicted RBP12.4□□□□□ -0.42
CUX1-210ENST00000497815 VITQ6UXI7 678 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 KIAA1328Q86T90 577 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 YAF2Q8IY57 180 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 BPIFB1Q8TDL5 484 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 ADAMTS19Q8TE59 1207 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 RNF34Q969K3 372 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 ELSPBP1Q96BH3 223 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 BTBD6Q96KE9 485 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 SERPINB11Q96P15 392 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 NECAB3Q96P71 396 aaPredicted RBP12.4□□□□□ -0.42
CUX1-210ENST00000497815 NPY6RQ99463 290 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 ADAM33Q9BZ11 813 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 RAB6CQ9H0N0 254 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 KCNK12Q9HB15 430 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 CALCOCO1Q9P1Z2 691 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 BRWD1Q9NSI6 2320 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 COL6A3P12111 3177 aa12.4□□□□□ -0.42
CUX1-210ENST00000497815 ANAPC1Q9H1A4 1944 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 RCCD1A6NED2 376 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 IRAK2O43187 625 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 CCP110O43303 1012 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 ECI2O75521 394 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 STC2O76061 302 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 MOCS2O96007 188 aaPredicted RBP12.39□□□□□ -0.43
CUX1-210ENST00000497815 PSMA2P25787 234 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 ZNF143P52747 638 aaPredicted RBP12.39□□□□□ -0.43
CUX1-210ENST00000497815 ATXN1P54253 815 aaKnown RBP12.39□□□□□ -0.43
CUX1-210ENST00000497815 KRT83P78385 493 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 DEUP1Q05D60 604 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 USP4Q13107 963 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 ZC3H12AQ5D1E8 599 aaKnown RBP12.39□□□□□ -0.43
CUX1-210ENST00000497815 TJAP1Q5JTD0 557 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 CC2D1AQ6P1N0 951 aaPredicted RBP12.39□□□□□ -0.43
CUX1-210ENST00000497815 ARCQ7LC44 396 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 DDX42Q86XP3 938 aaKnown RBP eCLIP12.39□□□□□ -0.43
CUX1-210ENST00000497815 DENND1CQ8IV53 801 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 ZNF564Q8TBZ8 553 aaPredicted RBP12.39□□□□□ -0.43
CUX1-210ENST00000497815 FAM172AQ8WUF8 416 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 E2F7Q96AV8 911 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 PLD4Q96BZ4 506 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms