RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ZNF438Q7Z4V0 828 aa13.52□□□□□ -0.24
PTPRF-215ENST00000496447 PDGFDQ9GZP0 370 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-215ENST00000496447 NCAM2O15394 837 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 HNRNPRO43390 633 aaKnown RBP13.52□□□□□ -0.25
PTPRF-215ENST00000496447 CAND2O75155 1236 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 UBTFL6P0CB48 400 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-215ENST00000496447 TUFMP49411 452 aaKnown RBP13.52□□□□□ -0.25
PTPRF-215ENST00000496447 CYTH1Q15438 398 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 MARC1Q5VT66 337 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 OTOP1Q7RTM1 612 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 TFAP2DQ7Z6R9 452 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 ABRAQ8N0Z2 381 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 TUBGCP3Q96CW5 907 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 CCDC126Q96EE4 140 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 NDEL1Q9GZM8 345 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 ELOVL4Q9GZR5 314 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 ATP13A1Q9HD20 1204 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 GPRC5DQ9NZD1 345 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 DCDC2Q9UHG0 476 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 GOLGA8TH3BQL2 631 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 PLA2G6O60733 806 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 MAPK1P28482 360 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 MCL1Q07820 350 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 ERMARDQ5T6L9 678 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 ILDR2Q71H61 639 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 C10orf53Q8N6V4 93 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 DTX3LQ8TDB6 740 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 TATDN2Q93075 761 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 CELF6Q96J87 481 aaKnown RBP13.52□□□□□ -0.25
PTPRF-215ENST00000496447 SERPINB11Q96P15 392 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 ECSITQ9BQ95 431 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 CCDC3Q9BQI4 270 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 TINF2Q9BSI4 451 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 ILKAPQ9H0C8 392 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-215ENST00000496447 RBM22Q9NW64 420 aaKnown RBP eCLIP13.52□□□□□ -0.253e-6■■■■□ 22.7
PTPRF-215ENST00000496447 OR1E1P30953 314 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 ZPBP2Q6X784 338 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 ZFPM1Q8IX07 1006 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 ERP27Q96DN0 273 aa13.52□□□□□ -0.25
PTPRF-215ENST00000496447 MAGEB10Q96LZ2 347 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-215ENST00000496447 PXDNQ92626 1479 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 ZBTB39O15060 712 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 SPTLC1O15269 473 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 SKAP2O75563 359 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-215ENST00000496447 DEFB115Q30KQ5 88 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 PRPF39Q86UA1 669 aaKnown RBP13.51□□□□□ -0.25
PTPRF-215ENST00000496447 RIOX2Q8IUF8 465 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 EME1Q96AY2 570 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 ZNF333Q96JL9 665 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 NAT9Q9BTE0 207 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 UMODL1Q5DID0 1318 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 GUCA1CO95843 209 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 HOXA10P31260 410 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-215ENST00000496447 RD3Q7Z3Z2 195 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 NT5DC3Q86UY8 548 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 NT5DC4Q86YG4 428 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 EXD1Q8NHP7 514 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 CATSPER2Q96P56 530 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 PACSIN1Q9BY11 444 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 TMEM150BA6NC51 233 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 SERPINF2P08697 491 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 CHI3L1P36222 383 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-215ENST00000496447 GALNTL6Q49A17 601 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 ZCWPW2Q504Y3 356 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 REXO1L1PQ8IX06 675 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 KCNB2Q92953 911 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 FAM111AQ96PZ2 611 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 THTPAQ9BU02 230 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 WDR41Q9HAD4 459 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 MSRAQ9UJ68 235 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 SLIT1O75093 1534 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 MSH3P20585 1137 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 ADRM1Q16186 407 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 CATSPERGQ6ZRH7 1159 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 C11orf74Q86VG3 221 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 ZDHHC17Q8IUH5 632 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 KIF2BQ8N4N8 673 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 SYTL2Q9HCH5 934 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 UBP1Q9NZI7 540 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 V9GYQ6 96 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-215ENST00000496447 TULP2O00295 520 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 AHCYL1O43865 530 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 PCNAP12004 261 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 SP3Q02447 781 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 LRRC8BQ6P9F7 803 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.51□□□□□ -0.25
PTPRF-215ENST00000496447 NOA1Q8NC60 698 aaKnown RBP13.51□□□□□ -0.25
PTPRF-215ENST00000496447 DDHD1Q8NEL9 900 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 CYGBQ8WWM9 190 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 SIKE1Q9BRV8 207 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 TMEM121Q9BTD3 319 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 THUMPD3Q9BV44 507 aaKnown RBP13.51□□□□□ -0.25
PTPRF-215ENST00000496447 RAD18Q9NS91 495 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 C15orf41Q9Y2V0 281 aa13.51□□□□□ -0.25
PTPRF-215ENST00000496447 LOC100653049A0A140TA62 436 aa13.5□□□□□ -0.25
PTPRF-215ENST00000496447 KRT34O76011 436 aa13.5□□□□□ -0.25
PTPRF-215ENST00000496447 TUBP50607 506 aa13.5□□□□□ -0.25
PTPRF-215ENST00000496447 YWHAZP63104 245 aaKnown RBP13.5□□□□□ -0.25
PTPRF-215ENST00000496447 FAM163AQ96GL9 167 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms