RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 PRSS47A8MTI9 375 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 PYCARD-AS1I3L0S3 204 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 EIF4A1P60842 406 aaKnown RBP4.68□□□□□ -1.66
VPS50-219ENST00000495039 IGBP1P78318 339 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 STK3Q13188 491 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 KEAP1Q14145 624 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 USP49Q70CQ1 688 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 CUZD1Q86UP6 607 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 SKAP1Q86WV1 359 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 MICU3Q86XE3 530 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 SMCR8Q8TEV9 937 aaPredicted RBP4.68□□□□□ -1.66
VPS50-219ENST00000495039 NEUROG1Q92886 237 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 P2RY11Q96G91 374 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 SUCLG2Q96I99 432 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 SF3B5Q9BWJ5 86 aaKnown RBP4.68□□□□□ -1.66
VPS50-219ENST00000495039 ZCWPW1Q9H0M4 648 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 IP6K2Q9UHH9 426 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 AGO2Q9UKV8 859 aaKnown RBP4.68□□□□□ -1.66
VPS50-219ENST00000495039 A0A1W2PPC1 479 aa4.67□□□□□ -1.66
VPS50-219ENST00000495039 PRPF4O43172 522 aaKnown RBP eCLIP4.67□□□□□ -1.66
VPS50-219ENST00000495039 SNX2O60749 519 aa4.67□□□□□ -1.66
VPS50-219ENST00000495039 TFEBP19484 476 aa4.67□□□□□ -1.66
VPS50-219ENST00000495039 SLC7A1P30825 629 aa4.67□□□□□ -1.66
VPS50-219ENST00000495039 GALNSP34059 522 aa4.67□□□□□ -1.66
VPS50-219ENST00000495039 LTBQ06643 244 aa4.67□□□□□ -1.66
VPS50-219ENST00000495039 CLCA4Q14CN2 919 aa4.67□□□□□ -1.66
VPS50-219ENST00000495039 MSI2Q96DH6 328 aaKnown RBP4.67□□□□□ -1.66
VPS50-219ENST00000495039 FAM83DQ9H4H8 585 aa4.67□□□□□ -1.66
VPS50-219ENST00000495039 ZNF335Q9H4Z2 1342 aaPredicted RBP4.67□□□□□ -1.66
VPS50-219ENST00000495039 TCF20Q9UGU0 1960 aaKnown RBP4.66□□□□□ -1.66
VPS50-219ENST00000495039 A0A0G2JK05 382 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 TRIM43BA6NCK2 446 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 AQP7P3A6NL99 342 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 TBX3O15119 743 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 CA12O43570 354 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 CT47B1P0C2W7 299 aaPredicted RBP4.66□□□□□ -1.66
VPS50-219ENST00000495039 ST6GAL1P15907 406 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 MLH1P40692 756 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 ENTPD1P49961 510 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 EGR4Q05215 589 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 ANO6Q4KMQ2 910 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 KRTAP5-1Q6L8H4 278 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 UEVLDQ8IX04 471 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 ADGRF4Q8IZF3 695 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 IL31RAQ8NI17 732 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 TRIM43Q96BQ3 446 aaPredicted RBP4.66□□□□□ -1.66
VPS50-219ENST00000495039 HIST1H2AAQ96QV6 131 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 MOV10Q9HCE1 1003 aaKnown RBP4.66□□□□□ -1.66
VPS50-219ENST00000495039 CD93Q9NPY3 652 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 VPS45Q9NRW7 570 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 HDAC9Q9UKV0 1011 aa4.66□□□□□ -1.66
VPS50-219ENST00000495039 HEMK1Q9Y5R4 338 aaPredicted RBP4.66□□□□□ -1.66
VPS50-219ENST00000495039 UGDHO60701 494 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 ATG13O75143 517 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 TMIGD3P0DMS9 266 aaPredicted RBP4.65□□□□□ -1.67
VPS50-219ENST00000495039 ACVR2AP27037 513 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 RBL1P28749 1068 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 CPT1AP50416 773 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 AGFG1P52594 562 aaKnown RBP4.65□□□□□ -1.67
VPS50-219ENST00000495039 GAS1P54826 345 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 RRP1P56182 461 aaKnown RBP4.65□□□□□ -1.67
VPS50-219ENST00000495039 KRTAP10-5P60370 271 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 RPL36AP83881 106 aaKnown RBP4.65□□□□□ -1.67
VPS50-219ENST00000495039 SLC29A2Q14542 456 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 ODF3L2Q3SX64 289 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 B3GNT9Q6UX72 402 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 CLEC9AQ6UXN8 241 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 P3H2Q8IVL5 708 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.65□□□□□ -1.67
VPS50-219ENST00000495039 LPAR1Q92633 364 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 STK31Q9BXU1 1019 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 ATP6V0A4Q9HBG4 840 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 NMRK2Q9NPI5 230 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 THSD1Q9NS62 852 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 WNT16Q9UBV4 365 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 SLC27A6Q9Y2P4 619 aa4.65□□□□□ -1.67
VPS50-219ENST00000495039 C16orf96A6NNT2 1141 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 RAB27BO00194 218 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 TNFRSF13BO14836 293 aaPredicted RBP4.64□□□□□ -1.67
VPS50-219ENST00000495039 MBPP02686 304 aaPredicted RBP4.64□□□□□ -1.67
VPS50-219ENST00000495039 TMEM225BP0DP42 221 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 HSPA6P17066 643 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 TPH1P17752 444 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 NTSR1P30989 418 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 NEK2P51955 445 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 DLGAP5Q15398 846 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 CNGA3Q16281 694 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 NUGGCQ68CJ6 796 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 MZT2AQ6P582 158 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 SLC39A5Q6ZMH5 540 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 PPP1R35Q8TAP8 253 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 OIT3Q8WWZ8 545 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 WBP1Q96G27 269 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 AASDHPPTQ9NRN7 309 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 HOMER2Q9NSB8 354 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 SACM1LQ9NTJ5 587 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 DNAJB11Q9UBS4 358 aa4.64□□□□□ -1.67
VPS50-219ENST00000495039 HOXA11P31270 313 aaPredicted RBP4.63□□□□□ -1.67
VPS50-219ENST00000495039 IDUAP35475 653 aa4.63□□□□□ -1.67
VPS50-219ENST00000495039 COPAP53621 1224 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms