RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ADGRF2Q8IZF7 708 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RIBC1Q8N443 379 aaPredicted RBP11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 EIF1ADQ8N9N8 165 aaKnown RBP11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 BORCS6Q96GS4 357 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CELF6Q96J87 481 aaKnown RBP11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SYT15Q9BQS2 421 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 UNKQ9C0B0 810 aaKnown RBP11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PFDN4Q9NQP4 134 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DDIT4Q9NX09 232 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 HEY2Q9UBP5 337 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SSTR1P30872 391 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MAGEA8P43361 318 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 GJA8P48165 433 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 AP3M2P53677 418 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SNRPFP62306 86 aaKnown RBP11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CRADDP78560 199 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ARHGAP1Q07960 439 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PPIDQ08752 370 aaKnown RBP11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TMEM259Q4ZIN3 620 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 C11orf63Q6NUN7 778 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CES3Q6UWW8 571 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 C3orf62Q6ZUJ4 267 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 FAM13CQ8NE31 585 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LMO3Q8TAP4 145 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PDCD6IPQ8WUM4 868 aaKnown RBP11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CDK5RAP2Q96SN8 1893 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PQBP1O60828 265 aaKnown RBP11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 E2F6O75461 281 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KRT36O76013 467 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RARGP13631 454 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 FECHP22830 423 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LMO2P25791 158 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PBX3P40426 434 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ABCG1P45844 678 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SLC26A2P50443 739 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TMPRSS15P98073 1019 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DCTN2Q13561 401 aaKnown RBP11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PIGHQ14442 188 aaPredicted RBP11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 HIC1Q14526 733 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 STAT4Q14765 748 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 EML3Q32P44 896 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DUSP28Q4G0W2 176 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZNF618Q5T7W0 954 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 HEATR6Q6AI08 1181 aaKnown RBP11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 C4orf50Q6ZRC1 276 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CLEC4CQ8WTT0 213 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZC3H15Q8WU90 426 aaKnown RBP11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZFAND2BQ8WV99 257 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 FAM136AQ96C01 138 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PPP1R36Q96LQ0 422 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SEPT5Q99719 369 aaPredicted RBP11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PALMDQ9NP74 551 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KRT82Q9NSB4 513 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DDX43Q9NXZ2 648 aaKnown RBP11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MARCOQ9UEW3 520 aaPredicted RBP11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 XPO7Q9UIA9 1087 aaKnown RBP11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SLC12A4Q9UP95 1085 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PCDHA3Q9Y5H8 950 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 COL4A5P29400 1685 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 UBR3Q6ZT12 1888 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 BRWD3Q6RI45 1802 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SLC1A1P43005 524 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LMNB2Q03252 620 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MAP2K5Q13163 448 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 GEN1Q17RS7 908 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SPOCD1Q6ZMY3 1216 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RCOR2Q8IZ40 523 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 FITM2Q8N6M3 262 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PPP4R1Q8TF05 950 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 UCMAQ8WVF2 138 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PPP2R3CQ969Q6 453 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 GLT1D1Q96MS3 346 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NTPCRQ9BSD7 190 aaKnown RBP11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ELOVL4Q9GZR5 314 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CCDC68Q9H2F9 335 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PDZD7Q9H5P4 517 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CDY2AQ9Y6F7 541 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RRN3P2A6NIE6 340 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KPNA7A9QM74 516 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 GIPC1O14908 333 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 OR4Q2P0C623 313 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MAGEA4P43358 317 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 BRCC3P46736 316 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MBTD1Q05BQ5 628 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CRHR2Q13324 411 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ANKRD20A4Q4UJ75 823 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RGMBQ6NW40 437 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MARK2Q7KZI7 788 aaKnown RBP11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PLPPR4Q7Z2D5 763 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TNIP3Q96KP6 325 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ADAM2Q99965 735 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 HAUS8Q9BT25 410 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 GPR88Q9GZN0 384 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DRC3Q9H069 523 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LAMB2P55268 1798 aa11.1□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 A0A0A6YYK5 440 aaPredicted RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MEIS3P2A8K0S8 358 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DDX3YO15523 660 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 C22orf31O95567 290 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SNAI1O95863 264 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms