RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 HFE2Q6ZVN8 426 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 PSTKQ8IV42 348 aaKnown RBP21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 GDAP1Q8TB36 358 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 CCDC110Q8TBZ0 833 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 PCED1BQ96HM7 432 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 QKIQ96PU8 341 aaKnown RBP eCLIP21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 SMOQ99835 787 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 NSRP1Q9H0G5 558 aaKnown RBP21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 KIF9Q9HAQ2 790 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 SENP1Q9P0U3 644 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 RCOR3Q9P2K3 495 aaPredicted RBP21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 MFHAS1Q9Y4C4 1052 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 TCP11X1B4DZS4 312 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 MYCNP04198 464 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 GHRP10912 638 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 RABGGTBP53611 331 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 CAP1Q01518 475 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 FAXCQ5TGI0 409 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 SYPL2Q5VXT5 272 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 CCSAPQ6IQ19 270 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 CCDC197Q8NCU1 140 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 KLC2Q9H0B6 622 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 DTLQ9NZJ0 730 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 STAP1Q9ULZ2 295 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 NRP1O14786 923 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 PRPF4O43172 522 aaKnown RBP eCLIP21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 ZNF623O75123 536 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 AP1G2O75843 785 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 TOMM70O94826 608 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 STX2P32856 288 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 ARL4AP40617 200 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 DSC3Q14574 896 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 RNF187Q5TA31 235 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 KCNT2Q6UVM3 1135 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 AGGF1Q8N302 714 aaeCLIP21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 ZMIZ2Q8NF64 920 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 SGSM3Q96HU1 749 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 PAFAH2Q99487 392 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 FRMD8Q9BZ67 464 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 ULBP1Q9BZM6 244 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 POPDC2Q9HBU9 364 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 TMEM30AQ9NV96 361 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 CDH9Q9ULB4 789 aa21.88■■□□□ 1.09
CCDC88B-208ENST00000492980 SPAG7O75391 227 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 GCATO75600 419 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 FBXO21O94952 628 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 RAB27AP51159 221 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 TIGD5Q53EQ6 642 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 ADGRD1Q6QNK2 874 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 C4orf22Q6V702 233 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 CCDC33Q8N5R6 958 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 ETNK1Q9HBU6 452 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 TMPRSS4Q9NRS4 437 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 SAMD15Q9P1V8 674 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 CENPFP49454 3210 aa21.87■■□□□ 1.09
CCDC88B-208ENST00000492980 SYNJ2BP-COX16A0A087WUM0 186 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 KBTBD13C9JR72 458 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 M0QYT0 321 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 AVILO75366 819 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 FYNP06241 537 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 ATP2A2P16615 1042 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 SLC18A1P54219 525 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 CACNA2D1P54289 1103 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 DAOAP59103 153 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 GPRIN1Q7Z2K8 1008 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 MAGEB18Q96M61 343 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 OLFM3Q96PB7 478 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 SMC6Q96SB8 1091 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 KCNK16Q96T55 309 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 ELAC2Q9BQ52 826 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 ARHGEF4Q9NR80 690 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 COX16Q9P0S2 106 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 PTCH2Q9Y6C5 1203 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 ZNF638Q14966 1978 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 A0A1W2PPM1 405 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 PIAS1O75925 651 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 LIG3P49916 1009 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 WDR4P57081 412 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 ITIH4Q14624 930 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 LPIN1Q14693 890 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 RAB41Q5JT25 222 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 C4orf33Q8N1A6 199 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 RNF169Q8NCN4 708 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 DENND1AQ8TEH3 1009 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 PIGVQ9NUD9 493 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 SMG5Q9UPR3 1016 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 DNAH12Q6ZR08 3092 aa21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 TDRD15B5MCY1 1934 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-208ENST00000492980 DGKIO75912 1065 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 METTL18O95568 372 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 PRKAR2AP13861 404 aaKnown RBP21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 CST5P28325 142 aaPredicted RBP21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 DEUP1Q05D60 604 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 CCDC121Q6ZUS5 278 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 CAND1Q86VP6 1230 aaKnown RBP21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 RNF139Q8WU17 664 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 DCAKDQ8WVC6 231 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 RTP3Q9BQQ7 232 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 RASSF4Q9H2L5 321 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 PRDM16Q9HAZ2 1276 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms