RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 MTDHQ86UE4 582 aaKnown RBP12.9□□□□□ -0.34
HMGN1-220ENST00000492280 AGAP11Q8TF27 550 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 DEPDC1BQ8WUY9 529 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 TACO1Q9BSH4 297 aaKnown RBP12.9□□□□□ -0.34
HMGN1-220ENST00000492280 SNX25Q9H3E2 840 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 PCMTD2Q9NV79 361 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 DTLQ9NZJ0 730 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.9□□□□□ -0.34
HMGN1-220ENST00000492280 I3L4J1 428 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 C1QAP02745 245 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 STIP1P31948 543 aaKnown RBP12.9□□□□□ -0.34
HMGN1-220ENST00000492280 BST2Q10589 180 aaKnown RBP12.9□□□□□ -0.34
HMGN1-220ENST00000492280 MFSD10Q14728 455 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 BOLA3Q53S33 107 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 TAF1BQ53T94 588 aaPredicted RBP12.9□□□□□ -0.34
HMGN1-220ENST00000492280 CES4AQ5XG92 561 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 NCBP2-AS2Q69YL0 99 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 TWF2Q6IBS0 349 aaKnown RBP12.9□□□□□ -0.34
HMGN1-220ENST00000492280 ZCCHC23Q6ZST2 131 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 ADGRF2Q8IZF7 708 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 KIRREL3Q8IZU9 778 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 SLC44A1Q8WWI5 657 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 TMEM30AQ9NV96 361 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 PAK5Q9P286 719 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 IPPQ9Y573 584 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 SNX10Q9Y5X0 201 aa12.9□□□□□ -0.34
HMGN1-220ENST00000492280 RALGAPA2Q2PPJ7 1873 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 MYADML2A6NDP7 307 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 CHUKO15111 745 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 USP12O75317 370 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 KITP10721 976 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 RDXP35241 583 aaKnown RBP12.9□□□□□ -0.35
HMGN1-220ENST00000492280 ERFP50548 548 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 CACNA2D1P54289 1103 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 SESN2P58004 480 aaPredicted RBP12.9□□□□□ -0.35
HMGN1-220ENST00000492280 ACAP1Q15027 740 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 KIAA0319Q5VV43 1072 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 WSCD1Q658N2 575 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 RNF43Q68DV7 783 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 NLRP9Q7RTR0 991 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 PLCD3Q8N3E9 789 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 LRRC37BQ96QE4 947 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 PAAF1Q9BRP4 392 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 KLC2Q9H0B6 622 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 STARD13Q9Y3M8 1113 aa12.9□□□□□ -0.35
HMGN1-220ENST00000492280 SLC15A5A6NIM6 579 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 CELF2O95319 508 aaKnown RBP12.89□□□□□ -0.35
HMGN1-220ENST00000492280 F2P00734 622 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 RPSAP08865 295 aaKnown RBP12.89□□□□□ -0.35
HMGN1-220ENST00000492280 ABCG1P45844 678 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 AP1B1Q10567 949 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 MDH1BQ5I0G3 518 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 UBXN11Q5T124 520 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 OTUD1Q5VV17 481 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-220ENST00000492280 GPRIN1Q7Z2K8 1008 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 ARMC2Q8NEN0 867 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 APPL2Q8NEU8 664 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 KCNV2Q8TDN2 545 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 SRPK1Q96SB4 655 aaKnown RBP12.89□□□□□ -0.35
HMGN1-220ENST00000492280 ANLNQ9NQW6 1124 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 SENP1Q9P0U3 644 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 CNTN3Q9P232 1028 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 UBQLN1Q9UMX0 589 aaKnown RBP12.89□□□□□ -0.35
HMGN1-220ENST00000492280 PDCD11Q14690 1871 aaKnown RBP12.89□□□□□ -0.35
HMGN1-220ENST00000492280 CCDC78A2IDD5 438 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 WDR27A2RRH5 827 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 FAM72CH0Y354 149 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 KCNK1O00180 336 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 DPYSL4O14531 572 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 CHADO15335 359 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 UNC5CO95185 931 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 ATP2A2P16615 1042 aaKnown RBP12.89□□□□□ -0.35
HMGN1-220ENST00000492280 EPHB2P29323 1055 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 BCAT1P54687 386 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 MAP3K7CLP57077 242 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 PDK2Q15119 407 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 FAM72AQ5TYM5 149 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 FAM72DQ6L9T8 149 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 ALKAL1Q6UXT8 129 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 FAM72BQ86X60 149 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 NME8Q8N427 588 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 PDCD7Q8N8D1 485 aaKnown RBP12.89□□□□□ -0.35
HMGN1-220ENST00000492280 ANKRD52Q8NB46 1076 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 SMG8Q8ND04 991 aaKnown RBP12.89□□□□□ -0.35
HMGN1-220ENST00000492280 CCNYQ8ND76 341 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 HASPINQ8TF76 798 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 ATXN7L3BQ96GX2 97 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 KCNK16Q96T55 309 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 MANSC1Q9H8J5 431 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 ARMCX1Q9P291 453 aa12.89□□□□□ -0.35
HMGN1-220ENST00000492280 EIF4E1BA6NMX2 242 aaKnown RBP12.88□□□□□ -0.35
HMGN1-220ENST00000492280 I6L893 689 aaPredicted RBP12.88□□□□□ -0.35
HMGN1-220ENST00000492280 PIRO00625 290 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 STRNO43815 780 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 ZWINTO95229 277 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 TGM2P21980 687 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 CDC25CP30307 473 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 HEATR6Q6AI08 1181 aaKnown RBP12.88□□□□□ -0.35
HMGN1-220ENST00000492280 VPS52Q8N1B4 723 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 B3GALNT2Q8NCR0 500 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms