RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 XPO4Q9C0E2 1151 aaKnown RBP17■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 DLGAP2Q9P1A6 1054 aa17■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 NAALADL1Q9UQQ1 740 aa17■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 HCN4Q9Y3Q4 1203 aa17■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 MIA3Q5JRA6 1907 aa17■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 FAM170AA1A519 330 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 CBFA2T2O43439 604 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 HSF2BPO75031 334 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 KLKB1P03952 638 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 ADH5P11766 374 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 MAGEA9P43362 315 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 GABRB2P47870 512 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 NUBP1P53384 320 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 SLC6A3Q01959 620 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 TAF5Q15542 800 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 ASIC2Q16515 512 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 GAB4Q2WGN9 574 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 LY6G5CQ5SRR4 150 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 RHBDF2Q6PJF5 856 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 CLDN23Q96B33 292 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 C18orf8Q96DM3 657 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 SERPINB11Q96P15 392 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 SPHK2Q9NRA0 654 aa16.99■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQJ5 194 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 TRDMT1O14717 391 aaKnown RBP16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 CHRNB1P11230 501 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 RPS9P46781 194 aaKnown RBP16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 HARS2P49590 506 aaKnown RBP16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 GAD2Q05329 585 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 NNTQ13423 1086 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 LRRC32Q14392 662 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 SFMBT2Q5VUG0 894 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 SYPL2Q5VXT5 272 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 SLC26A9Q7LBE3 791 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 IRF2BP2Q7Z5L9 587 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 TAC4Q86UU9 113 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 DENND1CQ8IV53 801 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 DTWD2Q8NBA8 298 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 ZNF397Q8NF99 534 aaPredicted RBP16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 CD101Q93033 1021 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 IQCDQ96DY2 449 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 SLC2A13Q96QE2 648 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 PCDHB18PQ96TA0 734 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 AGPAT1Q99943 283 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 P2RY13Q9BPV8 354 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 SEPT11Q9NVA2 429 aaKnown RBP16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 AIPL1Q9NZN9 384 aa16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 AGO1Q9UL18 857 aaKnown RBP16.98■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 ITIH6Q6UXX5 1313 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 HOXC11O43248 304 aaPredicted RBP16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 DAB1O75553 588 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 GRAP2O75791 330 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 IGLV3-27P01718 113 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 COL9A1P20849 921 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 SCNN1AP37088 669 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 OPRD1P41143 372 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 GALK1P51570 392 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 TBX4P57082 545 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 GRSF1Q12849 480 aaKnown RBP eCLIP16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 FZD5Q13467 585 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 CLEC16AQ2KHT3 1053 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 DCAF6Q58WW2 860 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 TMEM196Q5HYL7 178 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 DGKKQ5KSL6 1271 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 FAM102AQ5T9C2 384 aaPredicted RBP16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 NAIF1Q69YI7 327 aaPredicted RBP16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 XYLT1Q86Y38 959 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 TMEM25Q86YD3 366 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 DEFB106AQ8N104 65 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 PRRX2Q99811 253 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 KCNH6Q9H252 994 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 LMAN1LQ9HAT1 526 aa16.97■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 IRAK2O43187 625 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 GALR2O43603 387 aaPredicted RBP16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 LATS1O95835 1130 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 UNGP13051 313 aaPredicted RBP16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 DRD1P21728 446 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 MMP8P22894 467 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 CHKAP35790 457 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 EIF2DP41214 584 aaKnown RBP16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 NSFP46459 744 aaKnown RBP16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 CDK17Q00537 523 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 CENPCQ03188 943 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 RING1Q06587 406 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 CCINQ13939 588 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 ANO4Q32M45 955 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 C2CD6Q53TS8 623 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 E4F1Q66K89 784 aaPredicted RBP16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 NUGGCQ68CJ6 796 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 FSTL4Q6MZW2 842 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 MMS22LQ6ZRQ5 1243 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 TPGS1Q6ZTW0 290 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 UNC45BQ8IWX7 931 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 FAM217AQ8IXS0 508 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 SLC30A5Q8TAD4 765 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 ADAM32Q8TC27 787 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 C11orf70Q9BRQ4 267 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 RBM12Q9NTZ6 932 aaKnown RBP16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 MARK1Q9P0L2 795 aa16.96■□□□□ 0.31
MSH5-SAPCD1-206ENST00000491552 TLR6Q9Y2C9 796 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms