RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ATXN3P54252 364 aaPredicted RBP13.04□□□□□ -0.32
CPSF3-204ENST00000489403 ZNF394Q53GI3 561 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 C10orf120Q5SQS8 335 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 FAM186BQ8IYM0 893 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 GATA6Q92908 595 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 HSPA12BQ96MM6 686 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 DUSP16Q9BY84 665 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 FBXO10Q9UK96 956 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 MAPK8IP1Q9UQF2 711 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 GON4LQ3T8J9 2241 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 SPAARA0A1B0GVQ0 90 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 ZBTB24O43167 697 aaPredicted RBP13.03□□□□□ -0.32
CPSF3-204ENST00000489403 PENKP01210 267 aaPredicted RBP13.03□□□□□ -0.32
CPSF3-204ENST00000489403 KLKB1P03952 638 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 KRT13P13646 458 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 SYKP43405 635 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 PSEN1P49768 467 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 NDUFA8P51970 172 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 GFPT1Q06210 699 aaPredicted RBP13.03□□□□□ -0.32
CPSF3-204ENST00000489403 ENPEPQ07075 957 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 DPYDQ12882 1025 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 FYB2Q5VWT5 728 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 RABEPKQ7Z6M1 372 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 TADA2BQ86TJ2 420 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 HDDC3Q8N4P3 179 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 ZNF276Q8N554 614 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 MINDY1Q8N5J2 469 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 TRIML1Q8N9V2 468 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 KDF1Q8NAX2 398 aaPredicted RBP13.03□□□□□ -0.32
CPSF3-204ENST00000489403 OR2I1PQ8NGU4 316 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 MRGPRX1Q96LB2 322 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 SPATA32Q96LK8 384 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 TMEM8AQ9HCN3 771 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 CLIC5Q9NZA1 410 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 RASAL2Q9UJF2 1139 aa13.03□□□□□ -0.32
CPSF3-204ENST00000489403 RALYQ9UKM9 306 aaKnown RBP13.03□□□□□ -0.32
CPSF3-204ENST00000489403 FAM237AA0A1B0GTK4 181 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 A0A1W2PQD8 194 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 PCNX2A6NKB5 2137 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 ARHGAP33O14559 1287 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 HYAL3O43820 417 aaPredicted RBP13.02□□□□□ -0.33
CPSF3-204ENST00000489403 OPHN1O60890 802 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 HMBSP08397 361 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 RALAP11233 206 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 CORO1AP31146 461 aaKnown RBP13.02□□□□□ -0.33
CPSF3-204ENST00000489403 PSMC2P35998 433 aaKnown RBP13.02□□□□□ -0.33
CPSF3-204ENST00000489403 MFAP3P55082 362 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 SIM1P81133 766 aaPredicted RBP13.02□□□□□ -0.33
CPSF3-204ENST00000489403 GEN1Q17RS7 908 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 FUT11Q495W5 492 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 ZCWPW2Q504Y3 356 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 KIAA1324Q6UXG2 1013 aaKnown RBP13.02□□□□□ -0.33
CPSF3-204ENST00000489403 GUF1Q8N442 669 aaKnown RBP13.02□□□□□ -0.33
CPSF3-204ENST00000489403 SEMA4DQ92854 862 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 CCDC47Q96A33 483 aaKnown RBP13.02□□□□□ -0.33
CPSF3-204ENST00000489403 ZNF419Q96HQ0 510 aaPredicted RBP13.02□□□□□ -0.33
CPSF3-204ENST00000489403 ZNF510Q9Y2H8 683 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 SLC27A6Q9Y2P4 619 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 STON1Q9Y6Q2 735 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 SPEGQ15772 3267 aa13.02□□□□□ -0.33
CPSF3-204ENST00000489403 TMEM8BA6NDV4 472 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 NDUFS2O75306 463 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 RPL13P26373 211 aaKnown RBP13.01□□□□□ -0.33
CPSF3-204ENST00000489403 CHKAP35790 457 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 IL12RB1P42701 662 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 MCCD1P59942 119 aaPredicted RBP13.01□□□□□ -0.33
CPSF3-204ENST00000489403 FAM193AP78312 1265 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 KRT85P78386 507 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 COG7P83436 770 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 EFEMP1Q12805 493 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 ADAM9Q13443 819 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 ENPP2Q13822 863 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 RAB41Q5JT25 222 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 KRT39Q6A163 491 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 RGL4Q8IZJ4 473 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 SLC4A11Q8NBS3 891 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 CCDC150Q8NCX0 1101 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 TMEM176AQ96HP8 235 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 FAXDC2Q96IV6 333 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 HEXIM2Q96MH2 286 aaKnown RBP13.01□□□□□ -0.33
CPSF3-204ENST00000489403 CDK5RAP1Q96SZ6 601 aaKnown RBP13.01□□□□□ -0.33
CPSF3-204ENST00000489403 ARID3AQ99856 593 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 CISHQ9NSE2 258 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 DNAAF2Q9NVR5 837 aaKnown RBP13.01□□□□□ -0.33
CPSF3-204ENST00000489403 USP36Q9P275 1121 aaKnown RBP13.01□□□□□ -0.33
CPSF3-204ENST00000489403 THAP10Q9P2Z0 257 aaPredicted RBP13.01□□□□□ -0.33
CPSF3-204ENST00000489403 AGO1Q9UL18 857 aaKnown RBP13.01□□□□□ -0.33
CPSF3-204ENST00000489403 ZDHHC9Q9Y397 364 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 NEUROG3Q9Y4Z2 214 aa13.01□□□□□ -0.33
CPSF3-204ENST00000489403 CKAP5Q14008 2032 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 GJB3O75712 270 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 SYPP08247 313 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 CD59P13987 128 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 MAOBP27338 520 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 CD6P30203 668 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 GTF2H1P32780 548 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 MXI1P50539 228 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 RAD23BP54727 409 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 PLEKHG6Q3KR16 790 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 ARHGAP17Q68EM7 881 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms