RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ZNF689Q96CS4 500 aaPredicted RBP12.65□□□□□ -0.38
HDAC6-230ENST00000488543 PWWP2AQ96N64 755 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 ACBD6Q9BR61 282 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 MRPL9Q9BYD2 267 aaKnown RBP12.65□□□□□ -0.38
HDAC6-230ENST00000488543 GPATCH2LQ9NWQ4 482 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 WHRNQ9P202 907 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 DSEQ9UL01 958 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 VWA8A3KMH1 1905 aa12.65□□□□□ -0.39
HDAC6-230ENST00000488543 CST8O60676 142 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 DAB1O75553 588 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 FSBPO95073 299 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 GAS8O95995 478 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 FGBP02675 491 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 TYMPP19971 482 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 ATXN1P54253 815 aaKnown RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 VCPP55072 806 aaKnown RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 SLC8A3P57103 927 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 MRPS5P82675 430 aaKnown RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 CA9Q16790 459 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 ZC3H12AQ5D1E8 599 aaKnown RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 RAB41Q5JT25 222 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 EFHC1Q5JVL4 640 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 RTP2Q5QGT7 225 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 VARS2Q5ST30 1063 aaKnown RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 SPOUT1Q5T280 376 aaKnown RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 FUT10Q6P4F1 479 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 RHBDF2Q6PJF5 856 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 RSPO2Q6UXX9 243 aaPredicted RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 CPLX4Q7Z7G2 160 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 PRUNE1Q86TP1 453 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 TLCD1Q96CP7 247 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 CABS1Q96KC9 395 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 SNRNP25Q9BV90 132 aaKnown RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 COLEC11Q9BWP8 271 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 ADAM7Q9H2U9 754 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 MLXIPLQ9NP71 852 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 HAUS2Q9NVX0 235 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 WDR70Q9NW82 654 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 GGT7Q9UJ14 662 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 DRG1Q9Y295 367 aaKnown RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 COL4A6Q14031 1691 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 DRD4P21917 467 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 BDNFP23560 247 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 IL4RP24394 825 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 CDH6P55285 790 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 DYNLT1P63172 113 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 FPGSQ05932 587 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 ACTN3Q08043 901 aaPredicted RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 BOLA3Q53S33 107 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 DENND2CQ68D51 928 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 SCYL2Q6P3W7 929 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 CCDC121Q6ZUS5 278 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 HFE2Q6ZVN8 426 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 DEFB106AQ8N104 65 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 ALLCQ8N6M5 410 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 GLIS1Q8NBF1 620 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 MGARPQ8TDB4 240 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 TBCBQ99426 244 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 VN1R3Q9BXE9 311 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 RC3H2Q9HBD1 1191 aaKnown RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 LRRC4Q9HBW1 653 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 CSNK1G1Q9HCP0 422 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 SAE1Q9UBE0 346 aaPredicted RBP12.64□□□□□ -0.39
HDAC6-230ENST00000488543 ASIC3Q9UHC3 531 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 CHD9Q3L8U1 2897 aa12.64□□□□□ -0.39
HDAC6-230ENST00000488543 GOLGA6L7A0A1B0GV03 622 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 A6NNZ2 444 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 OAZ2O95190 189 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 CREB1P16220 341 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 MATKP42679 507 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 VPS41P49754 854 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 TKTL1P51854 596 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 PITX1P78337 314 aaPredicted RBP12.63□□□□□ -0.39
HDAC6-230ENST00000488543 OTUD4Q01804 1114 aaKnown RBP12.63□□□□□ -0.39
HDAC6-230ENST00000488543 BTG3Q14201 252 aaPredicted RBP12.63□□□□□ -0.39
HDAC6-230ENST00000488543 TUBB8Q3ZCM7 444 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 SLC39A12Q504Y0 691 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 TMEM240Q5SV17 173 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 COL13A1Q5TAT6 717 aaPredicted RBP12.63□□□□□ -0.39
HDAC6-230ENST00000488543 MICALCLQ6ZW33 695 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 BNIPLQ7Z465 357 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 RFX6Q8HWS3 928 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 THEM5Q8N1Q8 247 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 ACTL9Q8TC94 416 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 SMARCD1Q96GM5 515 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 SLC2A13Q96QE2 648 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 XPO6Q96QU8 1125 aaKnown RBP12.63□□□□□ -0.39
HDAC6-230ENST00000488543 NCAPGQ9BPX3 1015 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 ULBP1Q9BZM6 244 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 FAM129AQ9BZQ8 928 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 PCDH18Q9HCL0 1135 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 MRPL42Q9Y6G3 142 aaKnown RBP12.63□□□□□ -0.39
HDAC6-230ENST00000488543 ZNF638Q14966 1978 aaKnown RBP12.63□□□□□ -0.39
HDAC6-230ENST00000488543 MDM4O15151 490 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 FYNP06241 537 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 ITGAVP06756 1048 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 PECAM1P16284 738 aaPredicted RBP12.63□□□□□ -0.39
HDAC6-230ENST00000488543 ARPP19P56211 112 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 DAOAP59103 153 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms