RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 HOXA11P31270 313 aaPredicted RBP3.96□□□□□ -1.78
SMC4-220ENST00000488017 DSCR9P59020 149 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 WDR5P61964 334 aaKnown RBP3.96□□□□□ -1.78
SMC4-220ENST00000488017 MTA1Q13330 715 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 DLGAP5Q15398 846 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 NUGGCQ68CJ6 796 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 SRGAP1Q7Z6B7 1085 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 UEVLDQ8IX04 471 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 METTL25Q8N6Q8 603 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 LPAR1Q92633 364 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 PHF21BQ96EK2 531 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 DHX36Q9H2U1 1008 aaKnown RBP3.96□□□□□ -1.78
SMC4-220ENST00000488017 PLSCR4Q9NRQ2 329 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 HIF1ANQ9NWT6 349 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 KIR2DS5A0A0G2JLQ3 304 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 MBD3L4A6NDZ8 208 aaPredicted RBP3.95□□□□□ -1.78
SMC4-220ENST00000488017 MBD3L3A6NE82 208 aaPredicted RBP3.95□□□□□ -1.78
SMC4-220ENST00000488017 KIR2DS3K7RE56 304 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 AGPSO00116 658 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 AP1G1O43747 822 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 UGDHO60701 494 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 ACAA1P09110 424 aaPredicted RBP3.95□□□□□ -1.78
SMC4-220ENST00000488017 FAM50AQ14320 339 aaKnown RBP3.95□□□□□ -1.78
SMC4-220ENST00000488017 CLCA4Q14CN2 919 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 NPNTQ6UXI9 565 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 RTL10Q7L3V2 364 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 KCTD20Q7Z5Y7 419 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 MORC1Q86VD1 984 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 DENND1CQ8IV53 801 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 GRAMD1CQ8IYS0 662 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 ADGRF4Q8IZF3 695 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 C6orf106Q9H6K1 298 aaPredicted RBP3.95□□□□□ -1.78
SMC4-220ENST00000488017 RMI1Q9H9A7 625 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 WASHC2CQ9Y4E1 1318 aa3.95□□□□□ -1.78
SMC4-220ENST00000488017 C16orf96A6NNT2 1141 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 H0YGN5 161 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 CGAP01215 116 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 HOXC6P09630 235 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 ST6GAL1P15907 406 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 RHCEP18577 417 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 EN2P19622 333 aaPredicted RBP3.94□□□□□ -1.78
SMC4-220ENST00000488017 GALNSP34059 522 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 RFX2P48378 723 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 PTDSS1P48651 473 aaKnown RBP3.94□□□□□ -1.78
SMC4-220ENST00000488017 EIF4A1P60842 406 aaKnown RBP3.94□□□□□ -1.78
SMC4-220ENST00000488017 KRT71Q3SY84 523 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 WASHC2DQ5SRD0 308 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 EGFLAMQ63HQ2 1017 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 TTLL5Q6EMB2 1281 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 USP49Q70CQ1 688 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 TRILQ7L0X0 811 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 OR56A3Q8NH54 315 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 LMO3Q8TAP4 145 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 GATA5Q9BWX5 397 aaPredicted RBP3.94□□□□□ -1.78
SMC4-220ENST00000488017 ASPSCR1Q9BZE9 553 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 ZCWPW1Q9H0M4 648 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 TCF7L1Q9HCS4 588 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 VPS45Q9NRW7 570 aa3.94□□□□□ -1.78
SMC4-220ENST00000488017 RPS10-NUDT3A0A1W2PQS6 291 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 H7C4K7 107 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 LDB3O75112 727 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 PIAS2O75928 621 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 MBPP02686 304 aaPredicted RBP3.93□□□□□ -1.78
SMC4-220ENST00000488017 TMIGD3P0DMS9 266 aaPredicted RBP3.93□□□□□ -1.78
SMC4-220ENST00000488017 PKMP14618 531 aaKnown RBP3.93□□□□□ -1.78
SMC4-220ENST00000488017 KLRC1P26715 233 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 DNASE1L3Q13609 305 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 ARHGEF7Q14155 803 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 SMTNL2Q2TAL5 461 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 PIK3CD-AS1Q5SR53 167 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 DAAM2Q86T65 1068 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.93□□□□□ -1.78
SMC4-220ENST00000488017 C11orf44Q8N8P7 122 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 PRPF38AQ8NAV1 312 aaKnown RBP3.93□□□□□ -1.78
SMC4-220ENST00000488017 MAML1Q92585 1016 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 SMAD5Q99717 465 aaKnown RBP3.93□□□□□ -1.78
SMC4-220ENST00000488017 WDR83Q9BRX9 315 aaKnown RBP3.93□□□□□ -1.78
SMC4-220ENST00000488017 RNF26Q9BY78 433 aaPredicted RBP3.93□□□□□ -1.78
SMC4-220ENST00000488017 ZNF556Q9HAH1 456 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 MYO6Q9UM54 1294 aa3.93□□□□□ -1.78
SMC4-220ENST00000488017 LUC7L2Q9Y383 392 aaKnown RBP3.93□□□□□ -1.78
SMC4-220ENST00000488017 HEMK1Q9Y5R4 338 aaPredicted RBP3.93□□□□□ -1.78
SMC4-220ENST00000488017 A0A1B0GUV1 79 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 AQP7P3A6NL99 342 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 H3BML4 177 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 CA12O43570 354 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 SNX2O60749 519 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 OFD1O75665 1012 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 KITP10721 976 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 HTR1BP28222 390 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 IDUAP35475 653 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 CNGA3Q16281 694 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 INO80DQ53TQ3 878 aaPredicted RBP3.92□□□□□ -1.78
SMC4-220ENST00000488017 SMCR8Q8TEV9 937 aaPredicted RBP3.92□□□□□ -1.78
SMC4-220ENST00000488017 SUCLG2Q96I99 432 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 SEZ6LQ9BYH1 1024 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 TM6SF1Q9BZW5 370 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 FAM83DQ9H4H8 585 aa3.92□□□□□ -1.78
SMC4-220ENST00000488017 RGS17Q9UGC6 210 aaPredicted RBP3.92□□□□□ -1.78
SMC4-220ENST00000488017 PCDHGB1Q9Y5G3 927 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms