RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 HSF5Q4G112 596 aaPredicted RBP18.58■□□□□ 0.57
VIM-206ENST00000487938 TAPT1Q6NXT6 567 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 SESTD1Q86VW0 696 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 UNC5BQ8IZJ1 945 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 NDUFAF2Q8N183 169 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 ENDOVQ8N8Q3 282 aaKnown RBP18.58■□□□□ 0.57
VIM-206ENST00000487938 PPP1R13LQ8WUF5 828 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 E2F7Q96AV8 911 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 C18orf25Q96B23 403 aaPredicted RBP18.58■□□□□ 0.57
VIM-206ENST00000487938 TBCBQ99426 244 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 TUBB6Q9BUF5 446 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 TAS2R1Q9NYW7 299 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 MARCOQ9UEW3 520 aaPredicted RBP18.58■□□□□ 0.57
VIM-206ENST00000487938 TUBGCP4Q9UGJ1 667 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 OTOFQ9HC10 1997 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 HMX2A2RU54 273 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 A6NJR5 290 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 I3L4J1 428 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 STAU1O95793 577 aaKnown RBP18.58■□□□□ 0.56
VIM-206ENST00000487938 ADORA2BP29275 332 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 MAGEA6P43360 314 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 PTDSS1P48651 473 aaKnown RBP18.58■□□□□ 0.56
VIM-206ENST00000487938 SESN3P58005 492 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 IRX4P78413 519 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 KYAT1Q16773 422 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 KIZQ2M2Z5 673 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 MDH1BQ5I0G3 518 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 MAMDC4Q6UXC1 1216 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 NUDCD3Q8IVD9 361 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 CDKL3Q8IVW4 592 aaPredicted RBP18.58■□□□□ 0.56
VIM-206ENST00000487938 ARID3BQ8IVW6 561 aaPredicted RBP18.58■□□□□ 0.56
VIM-206ENST00000487938 FBXO41Q8TF61 875 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 EBNA1BP2Q99848 306 aaKnown RBP18.58■□□□□ 0.56
VIM-206ENST00000487938 MROH8Q9H579 483 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 PIH1D1Q9NWS0 290 aaKnown RBP18.58■□□□□ 0.56
VIM-206ENST00000487938 LRRC42Q9Y546 428 aa18.58■□□□□ 0.56
VIM-206ENST00000487938 ASB14A6NK59 587 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 SKAP2O75563 359 aaPredicted RBP18.57■□□□□ 0.56
VIM-206ENST00000487938 KRT38O76015 456 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 CYP2C8P10632 490 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 CCDC130P13994 396 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 AMPD1P23109 780 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 ADCYAP1R1P41586 468 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 KPNB1Q14974 876 aaKnown RBP18.57■□□□□ 0.56
VIM-206ENST00000487938 SOWAHAQ2M3V2 549 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 PYROXD2Q8N2H3 581 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 TTC39CQ8N584 583 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 CCDC185Q8N715 623 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 MCUQ8NE86 351 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 GSDMBQ8TAX9 411 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 USP6NLQ92738 828 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 C16orf70Q9BSU1 422 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 C20orf27Q9GZN8 174 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 BATF3Q9NR55 127 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 CITO14578 2027 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 KLF11O14901 512 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 GCATO75600 419 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 GRM5P41594 1212 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 ABL2P42684 1182 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 CRADDP78560 199 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 CBLBQ13191 982 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 SMAD1Q15797 465 aaKnown RBP18.57■□□□□ 0.56
VIM-206ENST00000487938 ANKRD13AQ8IZ07 590 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 MCUR1Q96AQ8 359 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 KCTD15Q96SI1 283 aaPredicted RBP18.57■□□□□ 0.56
VIM-206ENST00000487938 DCLRE1BQ9H816 532 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 MTMR10Q9NXD2 777 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 SLC17A6Q9P2U8 582 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 AP4E1Q9UPM8 1137 aa18.57■□□□□ 0.56
VIM-206ENST00000487938 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.56■□□□□ 0.56
VIM-206ENST00000487938 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.56■□□□□ 0.56
VIM-206ENST00000487938 A8MXQ7 604 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 H3BRB1 525 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 DESP17661 470 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 MAGEA3P43357 314 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 ZCCHC23Q6ZST2 131 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 DENND5BQ6ZUT9 1274 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 RFX8Q6ZV50 586 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 DEPDC1BQ8WUY9 529 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 OPTNQ96CV9 577 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 EIF2AQ9BY44 585 aaKnown RBP18.56■□□□□ 0.56
VIM-206ENST00000487938 TUT1Q9H6E5 874 aaKnown RBP18.56■□□□□ 0.56
VIM-206ENST00000487938 DICER1Q9UPY3 1922 aaKnown RBP18.56■□□□□ 0.56
VIM-206ENST00000487938 SPDYE5A6NIY4 337 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 FAM159BA6NKW6 160 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 PAX7P23759 505 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 KRT72Q14CN4 511 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 DPYSL2Q16555 572 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 MARCH8Q5T0T0 291 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 ATG16L1Q676U5 607 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 WDR60Q8WVS4 1066 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 NDRG1Q92597 394 aaKnown RBP18.56■□□□□ 0.56
VIM-206ENST00000487938 LRRC39Q96DD0 335 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 PPARGC1AQ9UBK2 798 aaKnown RBP18.56■□□□□ 0.56
VIM-206ENST00000487938 PCDHA11Q9Y5I1 949 aa18.56■□□□□ 0.56
VIM-206ENST00000487938 WDR27A2RRH5 827 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 E7ENQ6 273 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 IL1BP01584 269 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 ENO1P06733 434 aaKnown RBP18.55■□□□□ 0.56
VIM-206ENST00000487938 GOT1P17174 413 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms