RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 STXBP2Q15833 593 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 DCAF6Q58WW2 860 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 OR5B17Q8NGF7 314 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 IL31RAQ8NI17 732 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 TMC2Q8TDI7 906 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 DDI1Q8WTU0 396 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 JADE3Q92613 823 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 RPAP3Q9H6T3 665 aaPredicted RBP13.92□□□□□ -0.18
USP42-206ENST00000479544 PALMDQ9NP74 551 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 POLIQ9UNA4 740 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 HMGCRP04035 888 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 IL1R1P14778 569 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 MGAT1P26572 445 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 EIF2B2P49770 351 aaKnown RBP13.92□□□□□ -0.18
USP42-206ENST00000479544 HMGCS2P54868 508 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 TMTC4Q5T4D3 741 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 FAM156AQ8NDB6 213 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 NR1H4Q96RI1 486 aaPredicted RBP13.92□□□□□ -0.18
USP42-206ENST00000479544 BEGAINQ9BUH8 593 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 GCOM2Q9BZD3 368 aaPredicted RBP13.92□□□□□ -0.18
USP42-206ENST00000479544 MRC1P22897 1456 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 LINC00854A0A1B0GVQ3 168 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 NAGLUP54802 743 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 MGAT5Q09328 741 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 CCDC15Q0P6D6 951 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 PDK1Q15118 436 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 PCSK7Q16549 785 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 C6orf52Q5T4I8 152 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 PTPRN2Q92932 1015 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 RRN3Q9NYV6 651 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 RNF181Q9P0P0 153 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 LRRC42Q9Y546 428 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 PCDHA2Q9Y5H9 948 aa13.92□□□□□ -0.18
USP42-206ENST00000479544 PHGDHO43175 533 aaKnown RBP13.91□□□□□ -0.18
USP42-206ENST00000479544 SERPINE1P05121 402 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 ACVR2BQ13705 512 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 TBCCQ15814 346 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 GSTA3Q16772 222 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 GLRA4Q5JXX5 417 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 CCDC81Q6ZN84 652 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 CMC1Q7Z7K0 106 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 DACT3Q96B18 629 aaPredicted RBP13.91□□□□□ -0.18
USP42-206ENST00000479544 RMND5BQ96G75 393 aaPredicted RBP13.91□□□□□ -0.18
USP42-206ENST00000479544 ELMO2Q96JJ3 720 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 SERAC1Q96JX3 654 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 NRDE2Q9H7Z3 1164 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 MYH7BA7E2Y1 1941 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 SLC26A4O43511 780 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 S100BP04271 92 aaPredicted RBP13.91□□□□□ -0.18
USP42-206ENST00000479544 ABHD2P08910 425 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 UQCRBP14927 111 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 KDELR1P24390 212 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 NAT14Q8WUY8 206 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 ATG4CQ96DT6 458 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 RUVBL2Q9Y230 463 aaKnown RBP13.91□□□□□ -0.18
USP42-206ENST00000479544 ORC6Q9Y5N6 252 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 UMODL1Q5DID0 1318 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 SPDYE16A6NNV3 312 aaPredicted RBP13.91□□□□□ -0.18
USP42-206ENST00000479544 DFFAO00273 331 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 ADCY6O43306 1168 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 TM7SF2O76062 418 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 CD48P09326 243 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 ZNF23P17027 643 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 CDK7P50613 346 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 TMEM62Q0P6H9 643 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 SPDYE2Q495Y8 402 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 TEDDM1Q5T9Z0 273 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 ACOT1Q86TX2 421 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 KBTBD2Q8IY47 623 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 IPMKQ8NFU5 416 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 PHF21BQ96EK2 531 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 SEPHS2Q99611 448 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 IARS2Q9NSE4 1012 aaKnown RBP13.91□□□□□ -0.18
USP42-206ENST00000479544 RBMX2Q9Y388 322 aaKnown RBP13.91□□□□□ -0.18
USP42-206ENST00000479544 NID2Q14112 1375 aa13.91□□□□□ -0.18
USP42-206ENST00000479544 MYOCOSA0A1B0GUC4 107 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 SDR42E2A6NKP2 422 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 TPP1O14773 563 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 MGEA5O60502 916 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 CFHP08603 1231 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 ITGB5P18084 799 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 APLP1P51693 650 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 GDF10P55107 478 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 NOMO3P69849 1222 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 BMT2Q1RMZ1 405 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 HYIQ5T013 277 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 TXNRD3NBQ6F5E7 133 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 ZDHHC14Q8IZN3 488 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 TMCO5AQ8N6Q1 288 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 DGCR14Q96DF8 476 aaKnown RBP13.9□□□□□ -0.18
USP42-206ENST00000479544 ZNF408Q9H9D4 720 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 VAV3Q9UKW4 847 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 PARP4Q9UKK3 1724 aaKnown RBP13.9□□□□□ -0.18
USP42-206ENST00000479544 hCG_1818297A0A087WSY0 165 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 UBA6A0AVT1 1052 aaPredicted RBP13.9□□□□□ -0.18
USP42-206ENST00000479544 SUPT7LO94864 414 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 KPNA2P52292 529 aaKnown RBP13.9□□□□□ -0.18
USP42-206ENST00000479544 DENND1BQ6P3S1 775 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 PATL1Q86TB9 770 aaKnown RBP13.9□□□□□ -0.18
USP42-206ENST00000479544 SCUBE3Q8IX30 993 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms