RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ATP6V1DQ9Y5K8 247 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 WDFY3Q8IZQ1 3526 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 AKAP13Q12802 2813 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SPEGQ15772 3267 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 IGHV1OR15-9A0A0B4J2B8 117 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CLSTN1O94985 981 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 C7P10643 843 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CEACAM1P13688 526 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 HOXB2P14652 356 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 NDUFV2P19404 249 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ITPKAP23677 461 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 DPP6P42658 865 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 COG7P83436 770 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 GOLGA8FQ08AF8 430 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 GOLGA8DPQ0D2H9 430 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PNOCQ13519 176 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CBWD6Q4V339 395 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ZNF394Q53GI3 561 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TRIM61Q5EBN2 209 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CBWD3Q5JTY5 395 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CBWD5Q5RIA9 395 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PSAPL1Q6NUJ1 521 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 METTL3Q86U44 580 aaKnown RBP12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PIGZQ86VD9 579 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TTC30AQ86WT1 665 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 IPO4Q8TEX9 1081 aaKnown RBP12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 JAKMIP2Q96AA8 810 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PIWIL1Q96J94 861 aaKnown RBP12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CDK5RAP1Q96SZ6 601 aaKnown RBP12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CAPN10Q9HC96 672 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 GDPD2Q9HCC8 539 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CALCOCO1Q9P1Z2 691 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 BCCIPQ9P287 314 aaKnown RBP eCLIP12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 NAGPAQ9UK23 515 aa12.87□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 UPK3BL1B0FP48 263 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 WASH3PC4AMC7 463 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 UPK3BL2E5RIL1 263 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CETN3O15182 167 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 MAP3K13O43283 966 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 RALAP11233 206 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CHKAP35790 457 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 WASP42768 502 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 DGKGP49619 791 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 MXI1P50539 228 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PMS1P54277 932 aaKnown RBP12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 MFAP3P55082 362 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 LMAN2Q12907 356 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PKDCCQ504Y2 493 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SH3PXD2AQ5TCZ1 1133 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ZNF658Q5TYW1 1059 aaPredicted RBP12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ANKRD40Q6AI12 368 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SLC36A4Q6YBV0 504 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PIP4P1Q86T03 277 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TADA2BQ86TJ2 420 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SLC41A1Q8IVJ1 513 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CPXM2Q8N436 756 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CCDC150Q8NCX0 1101 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ZNF419Q96HQ0 510 aaPredicted RBP12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 MRGPRX1Q96LB2 322 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 GSDMAQ96QA5 445 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 DCLK3Q9C098 648 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 MMRN2Q9H8L6 949 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PLK2Q9NYY3 685 aa12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 THAP10Q9P2Z0 257 aaPredicted RBP12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 AGO1Q9UL18 857 aaKnown RBP12.86□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CABIN1Q9Y6J0 2220 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TULP2O00295 520 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PMM2O15305 246 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SLC16A3O15427 465 aaKnown RBP12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 AP5Z1O43299 807 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 STX10O60499 249 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ZNF217O75362 1048 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 EPB41P11171 864 aaKnown RBP12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 NOVA1P51513 510 aaKnown RBP12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 FKBP3Q00688 224 aaKnown RBP12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TRIP4Q15650 581 aaPredicted RBP12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ST3GAL2Q16842 350 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 LYSMD4Q5XG99 296 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CHPFQ8IZ52 775 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SCML4Q8N228 414 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PGBD3Q8N328 593 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SLC35C1Q96A29 364 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TMEM121BQ9BXQ6 578 aaPredicted RBP12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 NUSAP1Q9BXS6 441 aaKnown RBP12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 DNAI2Q9GZS0 605 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CACNA2D2Q9NY47 1150 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 STOML2Q9UJZ1 356 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CLEC4EQ9ULY5 219 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 IGF2RP11717 2491 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 NUMA1Q14980 2115 aa12.85□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 DMXL2Q8TDJ6 3036 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 XPO1O14980 1071 aaKnown RBP12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 NPC1O15118 1278 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 GABBR2O75899 941 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ZBED1O96006 694 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SERPINF2P08697 491 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ENGP17813 658 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CORO1AP31146 461 aaKnown RBP12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ZNF132P52740 706 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 RPL6Q02878 288 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms