RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 ATP1A3P13637 1013 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 CYP11B1P15538 503 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 EIF2DP41214 584 aaKnown RBP14.85□□□□□ -0.03
VAMP4-203ENST00000474047 NRLP54845 237 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 SEC13P55735 322 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 SATB1Q01826 763 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 KDSRQ06136 332 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 TAF3Q5VWG9 929 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 MAMSTRQ6ZN01 415 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 TMEM110Q86TL2 294 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 DHX40Q8IX18 779 aaKnown RBP14.85□□□□□ -0.03
VAMP4-203ENST00000474047 MAML2Q8IZL2 1156 aaPredicted RBP14.85□□□□□ -0.03
VAMP4-203ENST00000474047 TMEM35BQ8NCS4 154 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 C1orf131Q8NDD1 294 aaKnown RBP14.85□□□□□ -0.03
VAMP4-203ENST00000474047 IPO4Q8TEX9 1081 aaKnown RBP14.85□□□□□ -0.03
VAMP4-203ENST00000474047 BHMTQ93088 406 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 GANQ9H2C0 597 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 CYTH4Q9UIA0 394 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 SLC8A2Q9UPR5 921 aa14.85□□□□□ -0.03
VAMP4-203ENST00000474047 ATG2BQ96BY7 2078 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 TBC1D3BA6NDS4 549 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 HOXC11O43248 304 aaPredicted RBP14.84□□□□□ -0.03
VAMP4-203ENST00000474047 GREM1O60565 184 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 GFPT2O94808 682 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 KLKB1P03952 638 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 TYRP14679 529 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 RPL34P49207 117 aaKnown RBP14.84□□□□□ -0.03
VAMP4-203ENST00000474047 GAS6Q14393 721 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 Q6ZNB5 142 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 RPLP0P6Q8NHW5 317 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 PHOX2BQ99453 314 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 PRMT8Q9NR22 394 aaPredicted RBP14.84□□□□□ -0.03
VAMP4-203ENST00000474047 DNAJC17Q9NVM6 304 aaKnown RBP14.84□□□□□ -0.03
VAMP4-203ENST00000474047 AGO1Q9UL18 857 aaKnown RBP14.84□□□□□ -0.03
VAMP4-203ENST00000474047 SIK3Q9Y2K2 1263 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 R4GN57 208 aa14.84□□□□□ -0.03
VAMP4-203ENST00000474047 PAPSS1O43252 624 aaPredicted RBP14.83□□□□□ -0.03
VAMP4-203ENST00000474047 MSI1O43347 362 aaKnown RBP14.83□□□□□ -0.03
VAMP4-203ENST00000474047 KAT7O95251 611 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 SERPINC1P01008 464 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 NBL1P41271 181 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 STAT1P42224 750 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 GRIA2P42262 883 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 YWHAZP63104 245 aaKnown RBP14.83□□□□□ -0.03
VAMP4-203ENST00000474047 GAB4Q2WGN9 574 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 C2orf27AQ580R0 203 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 GRAMD4Q6IC98 578 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 OR6B2Q6IFH4 312 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 MSANTD2Q6P1R3 559 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 CACNA2D4Q7Z3S7 1137 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 ALYREFQ86V81 257 aaKnown RBP14.83□□□□□ -0.03
VAMP4-203ENST00000474047 C12orf40Q86WS4 652 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 UNC45BQ8IWX7 931 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 WDTC1Q8N5D0 677 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 MSANTD4Q8NCY6 345 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 NKD2Q969F2 451 aaPredicted RBP14.83□□□□□ -0.03
VAMP4-203ENST00000474047 ACDQ96AP0 544 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 CPXM1Q96SM3 734 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 FAM126AQ9BYI3 521 aaPredicted RBP14.83□□□□□ -0.03
VAMP4-203ENST00000474047 HSD3B7Q9H2F3 369 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 POPDC2Q9HBU9 364 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 ZSCAN32Q9NX65 697 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 NAALADL1Q9UQQ1 740 aa14.83□□□□□ -0.03
VAMP4-203ENST00000474047 GOLGA6L19H0YKK7 550 aa14.83□□□□□ -0.04
VAMP4-203ENST00000474047 TULP3O75386 442 aa14.83□□□□□ -0.04
VAMP4-203ENST00000474047 SOX5P35711 763 aa14.83□□□□□ -0.04
VAMP4-203ENST00000474047 TBX4P57082 545 aa14.83□□□□□ -0.04
VAMP4-203ENST00000474047 TRIP4Q15650 581 aaPredicted RBP14.83□□□□□ -0.04
VAMP4-203ENST00000474047 EFHC1Q5JVL4 640 aa14.83□□□□□ -0.04
VAMP4-203ENST00000474047 DDI1Q8WTU0 396 aa14.83□□□□□ -0.04
VAMP4-203ENST00000474047 SERPINB11Q96P15 392 aa14.83□□□□□ -0.04
VAMP4-203ENST00000474047 ERGIC2Q96RQ1 377 aa14.83□□□□□ -0.04
VAMP4-203ENST00000474047 FUCA2Q9BTY2 467 aa14.83□□□□□ -0.04
VAMP4-203ENST00000474047 PLK2Q9NYY3 685 aa14.83□□□□□ -0.04
VAMP4-203ENST00000474047 CACNA1HO95180 2353 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 CAVIN2O95810 425 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 TNFRSF4P43489 277 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 SLC11A2P49281 568 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 MRE11P49959 708 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 ZSCAN23Q3MJ62 389 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 NUGGCQ68CJ6 796 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 HEATR6Q6AI08 1181 aaKnown RBP14.82□□□□□ -0.04
VAMP4-203ENST00000474047 TOGARAM2Q6ZUX3 1019 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 NOP9Q86U38 636 aaKnown RBP14.82□□□□□ -0.04
VAMP4-203ENST00000474047 ERICH1Q86X53 443 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 SEMA4AQ9H3S1 761 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 MARK1Q9P0L2 795 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 PCDHGA2Q9Y5H1 932 aa14.82□□□□□ -0.04
VAMP4-203ENST00000474047 CHURC1-FNTBB4DL54 471 aa14.81□□□□□ -0.04
VAMP4-203ENST00000474047 K7EQS6 105 aa14.81□□□□□ -0.04
VAMP4-203ENST00000474047 EPHB6O15197 1021 aa14.81□□□□□ -0.04
VAMP4-203ENST00000474047 MMEP08473 750 aa14.81□□□□□ -0.04
VAMP4-203ENST00000474047 TIE1P35590 1138 aa14.81□□□□□ -0.04
VAMP4-203ENST00000474047 DGKGP49619 791 aa14.81□□□□□ -0.04
VAMP4-203ENST00000474047 ARID5AQ03989 594 aa14.81□□□□□ -0.04
VAMP4-203ENST00000474047 DCAF6Q58WW2 860 aa14.81□□□□□ -0.04
VAMP4-203ENST00000474047 PKN3Q6P5Z2 889 aa14.81□□□□□ -0.04
VAMP4-203ENST00000474047 ZNF677Q86XU0 584 aa14.81□□□□□ -0.04
VAMP4-203ENST00000474047 ETFBKMTQ8IXQ9 262 aa14.81□□□□□ -0.04
VAMP4-203ENST00000474047 ADAM32Q8TC27 787 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms