RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 LDLRP01130 860 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 RNF224P0DH78 156 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 HOXD3P31249 432 aaPredicted RBP2.4□□□□□ -2.03
CCDC39-203ENST00000473854 UQCRC1P31930 480 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 IARSP41252 1262 aaKnown RBP2.4□□□□□ -2.03
CCDC39-203ENST00000473854 PCYT1AP49585 367 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 SEC61A1P61619 476 aaKnown RBP2.4□□□□□ -2.03
CCDC39-203ENST00000473854 GPC5P78333 572 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 INSCQ1MX18 579 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 KRTAP13-3Q3SY46 172 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 PIK3CD-AS1Q5SR53 167 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 C6orf10Q5SRN2 563 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 ZNF449Q6P9G9 518 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 C16orf82Q7Z2V1 217 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 PNMA8AQ86V59 439 aaPredicted RBP2.4□□□□□ -2.03
CCDC39-203ENST00000473854 RFLNBQ8N5W9 214 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 CNTD1Q8N815 330 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 CLEC18CQ8NCF0 446 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 ATL2Q8NHH9 583 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 SLC35A4Q96G79 324 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 WDYHV1Q96HA8 205 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 TRIM5Q9C035 493 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 ZCWPW1Q9H0M4 648 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 SEMA5BQ9P283 1151 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 G3BP2Q9UN86 482 aaKnown RBP2.4□□□□□ -2.03
CCDC39-203ENST00000473854 INSL5Q9Y5Q6 135 aa2.4□□□□□ -2.03
CCDC39-203ENST00000473854 ABCC9O60706 1549 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 A0A087WWL8 130 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 LOC102724159A0A0B4J2E5 919 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 IGKV3D-20A0A0C4DH25 116 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 EXOC5O00471 708 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 MDM4O15151 490 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 GLUD1P00367 558 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 MT-CO1P00395 513 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 IGLV2-11P01706 119 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 FCGR1AP12314 374 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 CNGA1P29973 690 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 GLUD2P49448 558 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 MAP2K6P52564 334 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 FMO1Q01740 532 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 CCDC15Q0P6D6 951 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 KIF5AQ12840 1032 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 PLS1Q14651 629 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 PWP2Q15269 919 aaKnown RBP2.39□□□□□ -2.03
CCDC39-203ENST00000473854 LCE3CQ5T5A8 94 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 BSPRYQ5W0U4 402 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 PLEKHA7Q6IQ23 1121 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 PARM1Q6UWI2 310 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 SH2D6Q7Z4S9 175 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 NECAB2Q7Z6G3 386 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 JAZF1Q86VZ6 243 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 DNAJC5GQ8N7S2 189 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 PRR26Q8N8Z3 221 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 DNAJB14Q8TBM8 379 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 TMEM174Q8WUU8 243 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 RTP4Q96DX8 246 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 ELOVL1Q9BW60 279 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 C1QTNF4Q9BXJ3 329 aa2.39□□□□□ -2.03
CCDC39-203ENST00000473854 RNF26Q9BY78 433 aaPredicted RBP2.39□□□□□ -2.03
CCDC39-203ENST00000473854 AGO4Q9HCK5 861 aaKnown RBP2.39□□□□□ -2.03
CCDC39-203ENST00000473854 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.39□□□□□ -2.03
CCDC39-203ENST00000473854 PHLDB1Q86UU1 1377 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 MYO15BQ96JP2 1530 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 SHTN1A0MZ66 631 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 CD3EAPO15446 510 aaKnown RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 PCDHGA12O60330 932 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 SRGAP2O75044 1071 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 PPP1R3DO95685 299 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 KLKB1P03952 638 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 KRT5P13647 590 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 ST6GAL1P15907 406 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 ANOS1P23352 680 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 KLRC1P26715 233 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 MCM5P33992 734 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 KRT2P35908 639 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 ERVK11-1P61568 191 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 WDR5P61964 334 aaKnown RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 NKX6-1P78426 367 aaPredicted RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 GAD2Q05329 585 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 Q0VFX4 171 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 PTCHD3Q3KNS1 767 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 H1FNTQ75WM6 255 aaPredicted RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 MYPOPQ86VE0 399 aaPredicted RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 CBARPQ8N350 705 aaPredicted RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 SLC15A4Q8N697 577 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 C7orf57Q8NEG2 295 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 SNED1Q8TER0 1413 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 CDK5RAP3Q96JB5 506 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 ZNF668Q96K58 619 aaPredicted RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 NODALQ96S42 347 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 SENP7Q9BQF6 1050 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 EGLN1Q9GZT9 426 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 MS4A7Q9GZW8 240 aaPredicted RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 KRCC1Q9NPI7 259 aaPredicted RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 SIRT3Q9NTG7 399 aaPredicted RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 PIH1D1Q9NWS0 290 aaKnown RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 IGSF9Q9P2J2 1179 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 STEAP1Q9UHE8 339 aa2.38□□□□□ -2.03
CCDC39-203ENST00000473854 MAGED2Q9UNF1 606 aaPredicted RBP2.38□□□□□ -2.03
CCDC39-203ENST00000473854 PCDHGA9Q9Y5G4 932 aaKnown RBP2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms