RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 DGKQP52824 942 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 GPC5P78333 572 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 DEUP1Q05D60 604 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 TWIST1Q15672 202 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 TMTC4Q5T4D3 741 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 USP17L6PQ6QN14 398 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 CLEC9AQ6UXN8 241 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 C16orf71Q8IYS4 520 aaPredicted RBP6.54□□□□□ -1.36
CCDC39-202ENST00000471307 FSTL5Q8N475 847 aaPredicted RBP6.54□□□□□ -1.36
CCDC39-202ENST00000471307 FAM71DQ8N9W8 422 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 C16orf52Q8NHV5 167 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 SLC25A32Q9H2D1 315 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 ZBTB26Q9HCK0 441 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 TRNAU1APQ9NX07 287 aaKnown RBP6.54□□□□□ -1.36
CCDC39-202ENST00000471307 ASAP1Q9ULH1 1129 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 HECW1Q76N89 1606 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 RAPGEF6Q8TEU7 1601 aa6.54□□□□□ -1.36
CCDC39-202ENST00000471307 CCDC18Q5T9S5 1454 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 PLB1Q6P1J6 1458 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 ABCA8O94911 1581 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 PCF11O94913 1555 aaKnown RBP6.53□□□□□ -1.36
CCDC39-202ENST00000471307 WDR47O94967 919 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 NR4A2P43354 598 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 HSF1Q00613 529 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 CCDC15Q0P6D6 951 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 C10orf25Q5T742 122 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 UBE2Q1Q7Z7E8 422 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 ZNF366Q8N895 744 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 ATP11CQ8NB49 1132 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 TIFAQ96CG3 184 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 NAF1Q96HR8 494 aaKnown RBP6.53□□□□□ -1.36
CCDC39-202ENST00000471307 SIGLEC11Q96RL6 698 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 COLEC11Q9BWP8 271 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 SPRTNQ9H040 489 aaPredicted RBP6.53□□□□□ -1.36
CCDC39-202ENST00000471307 USP29Q9HBJ7 922 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 TBC1D23Q9NUY8 699 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 SEMA5BQ9P283 1151 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 UHRF1BP1LA0JNW5 1464 aa6.53□□□□□ -1.36
CCDC39-202ENST00000471307 ARHGEF11O15085 1522 aa6.52□□□□□ -1.37
CCDC39-202ENST00000471307 EPRSP07814 1512 aaKnown RBP6.52□□□□□ -1.37
CCDC39-202ENST00000471307 SOCS2O14508 198 aa6.52□□□□□ -1.37
CCDC39-202ENST00000471307 MAPK7Q13164 816 aa6.52□□□□□ -1.37
CCDC39-202ENST00000471307 DNASE1L3Q13609 305 aa6.52□□□□□ -1.37
CCDC39-202ENST00000471307 ACOX1Q15067 660 aa6.52□□□□□ -1.37
CCDC39-202ENST00000471307 AWAT1Q58HT5 328 aa6.52□□□□□ -1.37
CCDC39-202ENST00000471307 CC2D1BQ5T0F9 858 aaKnown RBP6.52□□□□□ -1.37
CCDC39-202ENST00000471307 C9orf106Q8NAJ2 232 aa6.52□□□□□ -1.37
CCDC39-202ENST00000471307 SUN3Q8TAQ9 357 aa6.52□□□□□ -1.37
CCDC39-202ENST00000471307 ABHD5Q8WTS1 349 aa6.52□□□□□ -1.37
CCDC39-202ENST00000471307 APOL5Q9BWW9 433 aa6.52□□□□□ -1.37
CCDC39-202ENST00000471307 CORO2BQ9UQ03 480 aa6.52□□□□□ -1.37
CCDC39-202ENST00000471307 NUP153P49790 1475 aaKnown RBP6.52□□□□□ -1.37
CCDC39-202ENST00000471307 PLEKHD1A6NEE1 506 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 PROB1E7EW31 1015 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 KCNQ3O43525 872 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 PQBP1O60828 265 aaKnown RBP6.51□□□□□ -1.37
CCDC39-202ENST00000471307 TACR3P29371 465 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 SLC5A2P31639 672 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 THBS4P35443 961 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 PIK3CBP42338 1070 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 CFHR1Q03591 330 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 ZNF543Q08ER8 600 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 RABEP1Q15276 862 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 SEC23BQ15437 767 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 PFKFB3Q16875 520 aaPredicted RBP6.51□□□□□ -1.37
CCDC39-202ENST00000471307 SHC4Q6S5L8 630 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 NANOGP1Q8N7R0 232 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 RXFP3Q9NSD7 469 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 TMOD4Q9NZQ9 345 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 AFG3L2Q9Y4W6 797 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 TIAM1Q13009 1591 aa6.51□□□□□ -1.37
CCDC39-202ENST00000471307 ABCC2Q92887 1545 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 CACNA1IQ9P0X4 2223 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 ATP10BO94823 1461 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 LRRC9Q6ZRR7 1453 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 MTUS2Q5JR59 1369 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 FYB1O15117 783 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 CCNT2O60583 730 aaKnown RBP6.5□□□□□ -1.37
CCDC39-202ENST00000471307 CNOT3O75175 753 aaKnown RBP6.5□□□□□ -1.37
CCDC39-202ENST00000471307 TMIGD3P0DMS9 266 aaPredicted RBP6.5□□□□□ -1.37
CCDC39-202ENST00000471307 MYL4P12829 197 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 ITGB6P18564 788 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 ATICP31939 592 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 CCT4P50991 539 aaKnown RBP6.5□□□□□ -1.37
CCDC39-202ENST00000471307 JAK3P52333 1124 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 RPS13P62277 151 aaKnown RBP6.5□□□□□ -1.37
CCDC39-202ENST00000471307 ID2Q02363 134 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 SRSF1Q07955 248 aaKnown RBP eCLIP6.5□□□□□ -1.37
CCDC39-202ENST00000471307 MTAPQ13126 283 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 SLC14A1Q13336 389 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 GRHL2Q6ISB3 625 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 BEND5Q7L4P6 421 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 SKAP1Q86WV1 359 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 WDR24Q96S15 920 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 ADGRE3Q9BY15 652 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 RNF26Q9BY78 433 aaPredicted RBP6.5□□□□□ -1.37
CCDC39-202ENST00000471307 RIMBP3CA6NJZ7 1639 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 RIMBP3BA6NNM3 1639 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 RIMBP3Q9UFD9 1639 aa6.5□□□□□ -1.37
CCDC39-202ENST00000471307 A0A087WZ62 844 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms