RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CISD3P0C7P0 127 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 GABRG2P18507 467 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 BCAT1P54687 386 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 EFEMP1Q12805 493 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 SGO2Q562F6 1265 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 SPDYCQ5MJ68 293 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 SDE2Q6IQ49 451 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 TOGARAM2Q6ZUX3 1019 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 ELOA2Q8IYF1 753 aaPredicted RBP17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 FRMD1Q8N878 549 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 LSM14BQ9BX40 385 aaKnown RBP17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 METTL14Q9HCE5 456 aaKnown RBP17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 MBD1Q9UIS9 605 aaPredicted RBP17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 FBXO10Q9UK96 956 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 A0A1W2PQF6 199 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 PRRT4C9JH25 899 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 PSMA7O14818 248 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 XPO1O14980 1071 aaKnown RBP17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 HMBSP08397 361 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 CORO1AP31146 461 aaKnown RBP17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 CHKAP35790 457 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 WASP42768 502 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 TKTL1P51854 596 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 YWHAGP61981 247 aaKnown RBP eCLIP17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 STIM1Q13586 685 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 GOLGA7BQ2TAP0 167 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 PM20D1Q6GTS8 502 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 RSRC2Q7L4I2 434 aaKnown RBP17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 TMEFF1Q8IYR6 380 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 CHPFQ8IZ52 775 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 UBR7Q8N806 425 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 PIGKQ92643 395 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 BHMTQ93088 406 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 DHTKD1Q96HY7 919 aaPredicted RBP17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 ACOX2Q99424 681 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 GABRG3Q99928 467 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 PLK2Q9NYY3 685 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 MARCH2Q9P0N8 246 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 HESX1Q9UBX0 185 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 TSPAN16Q9UKR8 245 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 STRIP2Q9ULQ0 834 aa17.38■□□□□ 0.37
CCDC28B-204ENST00000469003 C4orf47A7E2U8 309 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 PATE3B3GLJ2 98 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 TULP2O00295 520 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 ZBTB24O43167 697 aaPredicted RBP17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 ZBED1O96006 694 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 PENKP01210 267 aaPredicted RBP17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 VDRP11473 427 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 TBXAS1P24557 533 aaPredicted RBP17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 PPP1R2P41236 205 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 DPP6P42658 865 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 PDE4CQ08493 712 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 BST2Q10589 180 aaKnown RBP17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 FYB2Q5VWT5 728 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 IPO4Q8TEX9 1081 aaKnown RBP17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 P2RY11Q96G91 374 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 CEP63Q96MT8 703 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 ULBP1Q9BZM6 244 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 CD248Q9HCU0 757 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 CALCOCO1Q9P1Z2 691 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 EVLQ9UI08 416 aaPredicted RBP17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 MAN1B1Q9UKM7 699 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 KIAA1257Q9ULG3 409 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 SLC27A6Q9Y2P4 619 aa17.37■□□□□ 0.37
CCDC28B-204ENST00000469003 SLC12A8A0AV02 714 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 GFRA2O00451 464 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 PMM2O15305 246 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 CD19P15391 556 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 PTGER3P43115 390 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 FMO5P49326 533 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 DAB2IPQ5VWQ8 1189 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 SLC36A4Q6YBV0 504 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 BHLHA9Q7RTU4 235 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 SYT12Q8IV01 421 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 CPXM2Q8N436 756 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 LRRC4Q9HBW1 653 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 TMEM9BQ9NQ34 198 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 OLA1Q9NTK5 396 aaKnown RBP17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 RALYQ9UKM9 306 aaKnown RBP17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 ANGPTL2Q9UKU9 493 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 AGO1Q9UL18 857 aaKnown RBP17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 CEP192Q8TEP8 1941 aa17.36■□□□□ 0.37
CCDC28B-204ENST00000469003 O00370 1275 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 AP5Z1O43299 807 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 KCNK5O95279 499 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 SETSIPP0DME0 302 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 CD44P16070 742 aaKnown RBP17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 NDUFV2P19404 249 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 IRX4P78413 519 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 LRMPQ12912 555 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 CCDC40Q4G0X9 1142 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 N4BP2L1Q5TBK1 243 aaPredicted RBP17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 LYSMD4Q5XG99 296 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 ISM2Q6H9L7 571 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 KIAA1211LQ6NV74 962 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 FOXR2Q6PJQ5 311 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 ARMCX6Q7L4S7 300 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 DENND1CQ8IV53 801 aa17.35■□□□□ 0.37
CCDC28B-204ENST00000469003 KCTD13Q8WZ19 329 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms