RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 RMND1Q9NWS8 449 aa25.71■■□□□ 1.71
PTCH1-210ENST00000468211 COQ4Q9Y3A0 265 aa25.71■■□□□ 1.71
PTCH1-210ENST00000468211 ATXN2Q99700 1313 aaKnown RBP25.7■■□□□ 1.71
PTCH1-210ENST00000468211 GIPC1O14908 333 aa25.7■■□□□ 1.7
PTCH1-210ENST00000468211 PSAPL1Q6NUJ1 521 aa25.7■■□□□ 1.7
PTCH1-210ENST00000468211 CHPFQ8IZ52 775 aa25.7■■□□□ 1.7
PTCH1-210ENST00000468211 ANKRD52Q8NB46 1076 aa25.7■■□□□ 1.7
PTCH1-210ENST00000468211 CCDC34Q96HJ3 373 aa25.7■■□□□ 1.7
PTCH1-210ENST00000468211 GSDMAQ96QA5 445 aa25.7■■□□□ 1.7
PTCH1-210ENST00000468211 CACNA2D2Q9NY47 1150 aa25.7■■□□□ 1.7
PTCH1-210ENST00000468211 FBXO10Q9UK96 956 aa25.7■■□□□ 1.7
PTCH1-210ENST00000468211 RAD54BQ9Y620 910 aa25.7■■□□□ 1.7
PTCH1-210ENST00000468211 WASH3PC4AMC7 463 aa25.69■■□□□ 1.7
PTCH1-210ENST00000468211 SLC16A3O15427 465 aaKnown RBP25.69■■□□□ 1.7
PTCH1-210ENST00000468211 ITPKAP23677 461 aa25.69■■□□□ 1.7
PTCH1-210ENST00000468211 FKBP3Q00688 224 aaKnown RBP25.69■■□□□ 1.7
PTCH1-210ENST00000468211 CUL2Q13617 745 aa25.69■■□□□ 1.7
PTCH1-210ENST00000468211 GOLGA7BQ2TAP0 167 aa25.69■■□□□ 1.7
PTCH1-210ENST00000468211 FYB2Q5VWT5 728 aa25.69■■□□□ 1.7
PTCH1-210ENST00000468211 BHLHA9Q7RTU4 235 aa25.69■■□□□ 1.7
PTCH1-210ENST00000468211 IPO4Q8TEX9 1081 aaKnown RBP25.69■■□□□ 1.7
PTCH1-210ENST00000468211 GABRG3Q99928 467 aa25.69■■□□□ 1.7
PTCH1-210ENST00000468211 SLC6A17Q9H1V8 727 aa25.69■■□□□ 1.7
PTCH1-210ENST00000468211 CD93Q9NPY3 652 aa25.69■■□□□ 1.7
PTCH1-210ENST00000468211 PENKP01210 267 aaPredicted RBP25.68■■□□□ 1.7
PTCH1-210ENST00000468211 NDUFV2P19404 249 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 CORO1AP31146 461 aaKnown RBP25.68■■□□□ 1.7
PTCH1-210ENST00000468211 TKTL1P51854 596 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 YWHAGP61981 247 aaKnown RBP eCLIP25.68■■□□□ 1.7
PTCH1-210ENST00000468211 COG7P83436 770 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 PDE4CQ08493 712 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 LRMPQ12912 555 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 TRIM61Q5EBN2 209 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 TADA2BQ86TJ2 420 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 SYT12Q8IV01 421 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 UBR7Q8N806 425 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 SLC35C1Q96A29 364 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 TSG101Q99816 390 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 ULBP1Q9BZM6 244 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 TMEM9BQ9NQ34 198 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 MARCH2Q9P0N8 246 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 TSPAN16Q9UKR8 245 aa25.68■■□□□ 1.7
PTCH1-210ENST00000468211 AGO1Q9UL18 857 aaKnown RBP25.68■■□□□ 1.7
PTCH1-210ENST00000468211 BYSLQ13895 437 aaKnown RBP25.67■■□□□ 1.7
PTCH1-210ENST00000468211 LYSMD4Q5XG99 296 aa25.67■■□□□ 1.7
PTCH1-210ENST00000468211 PM20D1Q6GTS8 502 aa25.67■■□□□ 1.7
PTCH1-210ENST00000468211 ISM2Q6H9L7 571 aa25.67■■□□□ 1.7
PTCH1-210ENST00000468211 CDK5RAP1Q96SZ6 601 aaKnown RBP25.67■■□□□ 1.7
PTCH1-210ENST00000468211 FAM124BQ9H5Z6 455 aaPredicted RBP25.67■■□□□ 1.7
PTCH1-210ENST00000468211 EVLQ9UI08 416 aaPredicted RBP25.67■■□□□ 1.7
PTCH1-210ENST00000468211 PILRBQ9UKJ0 227 aa25.67■■□□□ 1.7
PTCH1-210ENST00000468211 CLEC4EQ9ULY5 219 aa25.67■■□□□ 1.7
PTCH1-210ENST00000468211 USP24Q9UPU5 2620 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 IGHV1OR15-9A0A0B4J2B8 117 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 SLC12A8A0AV02 714 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 ZBED1O96006 694 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 NOVA1P51513 510 aaKnown RBP25.66■■□□□ 1.7
PTCH1-210ENST00000468211 RPL6Q02878 288 aaKnown RBP25.66■■□□□ 1.7
PTCH1-210ENST00000468211 GEN1Q17RS7 908 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 SPDYCQ5MJ68 293 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 DAB2IPQ5VWQ8 1189 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 SDE2Q6IQ49 451 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 DENND1CQ8IV53 801 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 SMARCE1Q969G3 411 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 FSCN3Q9NQT6 498 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 ARMCX3Q9UH62 379 aaPredicted RBP25.66■■□□□ 1.7
PTCH1-210ENST00000468211 ANGPTL2Q9UKU9 493 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 CYP8B1Q9UNU6 501 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 ZNF510Q9Y2H8 683 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 CEP295Q9C0D2 2601 aa25.66■■□□□ 1.7
PTCH1-210ENST00000468211 PCDH15Q96QU1 1955 aa25.65■■□□□ 1.7
PTCH1-210ENST00000468211 GOLGA6L4A6NEF3 574 aa25.65■■□□□ 1.7
PTCH1-210ENST00000468211 XPO1O14980 1071 aaKnown RBP25.65■■□□□ 1.7
PTCH1-210ENST00000468211 KRT37O76014 449 aa25.65■■□□□ 1.7
PTCH1-210ENST00000468211 SMC2O95347 1197 aa25.65■■□□□ 1.7
PTCH1-210ENST00000468211 CD44P16070 742 aaKnown RBP25.65■■□□□ 1.7
PTCH1-210ENST00000468211 MFAP3P55082 362 aa25.65■■□□□ 1.7
PTCH1-210ENST00000468211 RSRC2Q7L4I2 434 aaKnown RBP25.65■■□□□ 1.7
PTCH1-210ENST00000468211 ARHGAP18Q8N392 663 aa25.65■■□□□ 1.7
PTCH1-210ENST00000468211 UBA3Q8TBC4 463 aa25.65■■□□□ 1.7
PTCH1-210ENST00000468211 DCLK3Q9C098 648 aa25.65■■□□□ 1.7
PTCH1-210ENST00000468211 SLC27A6Q9Y2P4 619 aa25.65■■□□□ 1.7
PTCH1-210ENST00000468211 CD19P15391 556 aa25.64■■□□□ 1.7
PTCH1-210ENST00000468211 CHKAP35790 457 aa25.64■■□□□ 1.7
PTCH1-210ENST00000468211 BCAT1P54687 386 aa25.64■■□□□ 1.7
PTCH1-210ENST00000468211 LRRC63Q05C16 580 aa25.64■■□□□ 1.7
PTCH1-210ENST00000468211 UAP1L1Q3KQV9 507 aa25.64■■□□□ 1.7
PTCH1-210ENST00000468211 SGO2Q562F6 1265 aa25.64■■□□□ 1.7
PTCH1-210ENST00000468211 SH3PXD2AQ5TCZ1 1133 aa25.64■■□□□ 1.7
PTCH1-210ENST00000468211 PEAR1Q5VY43 1037 aaPredicted RBP25.64■■□□□ 1.7
PTCH1-210ENST00000468211 SLC41A1Q8IVJ1 513 aa25.64■■□□□ 1.7
PTCH1-210ENST00000468211 MRGPRX1Q96LB2 322 aa25.64■■□□□ 1.7
PTCH1-210ENST00000468211 STON1Q9Y6Q2 735 aa25.64■■□□□ 1.7
PTCH1-210ENST00000468211 FRYQ5TBA9 3013 aa25.64■■□□□ 1.69
PTCH1-210ENST00000468211 CKAP5Q14008 2032 aa25.64■■□□□ 1.69
PTCH1-210ENST00000468211 AP5Z1O43299 807 aa25.63■■□□□ 1.69
PTCH1-210ENST00000468211 GABBR2O75899 941 aa25.63■■□□□ 1.69
PTCH1-210ENST00000468211 ENGP17813 658 aa25.63■■□□□ 1.69
PTCH1-210ENST00000468211 MAPK8P45983 427 aa25.63■■□□□ 1.69
PTCH1-210ENST00000468211 ADIGQ0VDE8 80 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms