RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 EML5Q05BV3 1969 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 SDK1Q7Z5N4 2213 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 CACNA1AO00555 2505 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 C4orf47A7E2U8 309 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 NDUFS2O75306 463 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 ZBED1O96006 694 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 CFIP05156 583 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 HNRNPLP14866 589 aaKnown RBP eCLIP18.37■□□□□ 0.53
COL7A1-206ENST00000466591 HARS2P49590 506 aaKnown RBP18.37■□□□□ 0.53
COL7A1-206ENST00000466591 BST2Q10589 180 aaKnown RBP18.37■□□□□ 0.53
COL7A1-206ENST00000466591 LMAN2Q12907 356 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 UAP1L1Q3KQV9 507 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 COBLL1Q53SF7 1204 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 KIAA1324Q6UXG2 1013 aaKnown RBP18.37■□□□□ 0.53
COL7A1-206ENST00000466591 SCD5Q86SK9 330 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 PHTF2Q8N3S3 785 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 DDI1Q8WTU0 396 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 DHTKD1Q96HY7 919 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-206ENST00000466591 ULBP1Q9BZM6 244 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 UBXN6Q9BZV1 441 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 PCDHB4Q9Y5E5 795 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 USP3Q9Y6I4 520 aa18.37■□□□□ 0.53
COL7A1-206ENST00000466591 BICDL2A1A5D9 508 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 XPO1O14980 1071 aaKnown RBP18.36■□□□□ 0.53
COL7A1-206ENST00000466591 ZNF217O75362 1048 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 PDE4CQ08493 712 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 ADIGQ0VDE8 80 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 TRIM61Q5EBN2 209 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 TOGARAM2Q6ZUX3 1019 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 PPM1KQ8N3J5 372 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 OLIG1Q8TAK6 271 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 UBA3Q8TBC4 463 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 CNTNAP3BQ96NU0 1288 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 CNTNAP3Q9BZ76 1288 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 CACNA2D2Q9NY47 1150 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 MYOFQ9NZM1 2061 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 CALCOCO1Q9P1Z2 691 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 STARD13Q9Y3M8 1113 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 DNAH14Q0VDD8 3507 aa18.36■□□□□ 0.53
COL7A1-206ENST00000466591 ATXN2Q99700 1313 aaKnown RBP18.35■□□□□ 0.53
COL7A1-206ENST00000466591 LNP1A1A4G5 178 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 SYNCRIPO60506 623 aaKnown RBP18.35■□□□□ 0.53
COL7A1-206ENST00000466591 SETSIPP0DME0 302 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 VDRP11473 427 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 LCP1P13796 627 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 GABRG2P18507 467 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 MAPK8P45983 427 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 FMO5P49326 533 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 NOVA1P51513 510 aaKnown RBP18.35■□□□□ 0.53
COL7A1-206ENST00000466591 PMS1P54277 932 aaKnown RBP18.35■□□□□ 0.53
COL7A1-206ENST00000466591 PSAPL1Q6NUJ1 521 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 TMEM270Q6UE05 265 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 SYT12Q8IV01 421 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 ZNF276Q8N554 614 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 DEFB119Q8N690 84 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 IPO4Q8TEX9 1081 aaKnown RBP18.35■□□□□ 0.53
COL7A1-206ENST00000466591 PLD4Q96BZ4 506 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 CEP63Q96MT8 703 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 KIAA1257Q9ULG3 409 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 CYP8B1Q9UNU6 501 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 CTNND2Q9UQB3 1225 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 RAD54BQ9Y620 910 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 THADAQ6YHU6 1953 aa18.35■□□□□ 0.53
COL7A1-206ENST00000466591 PATE3B3GLJ2 98 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 MAP7D1Q3KQU3 841 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 SPDYCQ5MJ68 293 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 Q6ZNB5 142 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 ANKS1BQ7Z6G8 1248 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 CREBRFQ8IUR6 639 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 FMNL3Q8IVF7 1028 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 RGL4Q8IZJ4 473 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 FRMD1Q8N878 549 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 SLC35C1Q96A29 364 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 ACOX2Q99424 681 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 LSM14BQ9BX40 385 aaKnown RBP18.34■□□□□ 0.53
COL7A1-206ENST00000466591 CIPCQ9C0C6 399 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 MAN1B1Q9UKM7 699 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 ANGPTL2Q9UKU9 493 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 COQ4Q9Y3A0 265 aa18.34■□□□□ 0.53
COL7A1-206ENST00000466591 PRRT4C9JH25 899 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 M0QYV0 167 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 BIN1O00499 593 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 GREM1O60565 184 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 KCNK5O95279 499 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 PTGER3P43115 390 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 RAB41Q5JT25 222 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 RABEPKQ7Z6M1 372 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 HDDC3Q8N4P3 179 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 ENGASEQ8NFI3 743 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 NELFBQ8WX92 580 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 EDEM1Q92611 657 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 GTPBP2Q9BX10 602 aaKnown RBP18.33■□□□□ 0.52
COL7A1-206ENST00000466591 ABCC13Q9NSE7 274 aa18.33■□□□□ 0.52
COL7A1-206ENST00000466591 AGO1Q9UL18 857 aaKnown RBP18.33■□□□□ 0.52
COL7A1-206ENST00000466591 GFRA2O00451 464 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 NPC1O15118 1278 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 FGFR1OPO95684 399 aaKnown RBP18.32■□□□□ 0.52
COL7A1-206ENST00000466591 GNA14O95837 355 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 KLKB1P03952 638 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 NDUFV2P19404 249 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms