RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 LRMDAQ9H2I8 198 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 RMND5AQ9H871 391 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 SPATA31A5Q5VU36 1347 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 SPATA31A7Q8IWB4 1347 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 EFCAB14O75071 495 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 TADA2AO75478 443 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 ALDH1A1P00352 501 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 MYL4P12829 197 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 PTDSS1P48651 473 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 MAPRE1Q15691 268 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 LRRC8DQ7L1W4 858 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 COLGALT1Q8NBJ5 622 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 STKLD1Q8NE28 680 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 DIS3LQ8TF46 1054 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 SEPT8Q92599 483 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 VPS33AQ96AX1 596 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 KIAA1683Q9H0B3 1180 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 HACD1B0YJ81 288 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 VIL1P09327 827 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 RARRES1P49788 294 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 FAAP100Q0VG06 881 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 SGO1Q5FBB7 561 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 AARS2Q5JTZ9 985 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 TBCELQ5QJ74 424 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 PLEKHA7Q6IQ23 1121 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 USP13Q92995 863 aaPredicted RBP19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 FOPNLQ96NB1 174 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 TBC1D10AQ9BXI6 508 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 TRMT6Q9UJA5 497 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 SHPRHQ149N8 1683 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 CCL15-CCL14A0A0B4J2E2 113 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 IL1R1P14778 569 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 DNAJB2P25686 324 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 RAD23AP54725 363 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 HUNKP57058 714 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 MYL6P60660 151 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 CCL15Q16663 113 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 ZNF484Q5JVG2 852 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 KLHL25Q9H0H3 589 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 MYOZ2Q9NPC6 264 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 DDX18Q9NVP1 670 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 GPATCH2LQ9NWQ4 482 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 CROTQ9UKG9 612 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 VANGL2Q9ULK5 521 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 PRPF4O43172 522 aaKnown RBP eCLIP19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 DDHD2O94830 711 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 EIF4BP23588 611 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 NME5P56597 212 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 ROR2Q01974 943 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 B3GNT6Q6ZMB0 384 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 EPS8L1Q8TE68 723 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 BBS2Q9BXC9 721 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 ARMCX1Q9P291 453 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 SFMBT1Q9UHJ3 866 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 RNF112Q9ULX5 631 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 C2CD2Q9Y426 696 aa19.52■□□□□ 0.72
CCDC88B-204ENST00000463837 ATRNO75882 1429 aa19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 MEI4A8MW99 385 aa19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 KPNA4O00629 521 aaPredicted RBP19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 KCNJ2P63252 427 aa19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 LAMC2Q13753 1193 aa19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 ITGA9Q13797 1035 aa19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 CBWD6Q4V339 395 aa19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 CBWD3Q5JTY5 395 aa19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 CBWD5Q5RIA9 395 aa19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 CENPLQ8N0S6 344 aaPredicted RBP19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 ATG4CQ96DT6 458 aa19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 DDIT4Q9NX09 232 aa19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 TMEM131LA2VDJ0 1609 aa19.52■□□□□ 0.71
CCDC88B-204ENST00000463837 PLIN5Q00G26 463 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 DHFR2Q86XF0 187 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 PHACTR1Q9C0D0 580 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 STN1Q9H668 368 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 SYTL2Q9HCH5 934 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 A1CFQ9NQ94 594 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 MCM8Q9UJA3 840 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 COMMD3-BMI1R4GMX3 469 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 A0A087WXM4 84 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 RASSF9O75901 435 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 PAEPP09466 180 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 CYP2B6P20813 491 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 MAPK1P28482 360 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 TTKP33981 857 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 MARSP56192 900 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 AGKQ53H12 422 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 TCHHL1Q5QJ38 904 aaPredicted RBP19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 KCNK18Q7Z418 384 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 RAB42Q8N4Z0 105 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 PRELID2Q8N945 189 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 SH3KBP1Q96B97 665 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 CHADO15335 359 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 BCL10O95999 233 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 CAP2P40123 477 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 LNX1Q8TBB1 728 aaPredicted RBP19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 SMIM31A0A1B0GVY4 71 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 EPHB6O15197 1021 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 PMPCBO75439 489 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 NPTXRO95502 500 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 CRABP2P29373 138 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 NPY2RP49146 381 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms