RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 DRD1P21728 446 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 PDIA3P30101 505 aaKnown RBP4.64□□□□□ -1.67
USP40-209ENST00000452724 DGKQP52824 942 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 HOXA4Q00056 320 aaPredicted RBP4.64□□□□□ -1.67
USP40-209ENST00000452724 DEUP1Q05D60 604 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 TRIM14Q14142 442 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 KRT72Q14CN4 511 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 PFKFB4Q16877 469 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 ZACNQ401N2 412 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 AASDHQ4L235 1098 aaPredicted RBP4.64□□□□□ -1.67
USP40-209ENST00000452724 TMEM119Q4V9L6 283 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 TMEM196Q5HYL7 178 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 TRIM72Q6ZMU5 477 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 C1QL2Q7Z5L3 287 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 TTC30AQ86WT1 665 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.64□□□□□ -1.67
USP40-209ENST00000452724 PNPLA1Q8N8W4 532 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 FAM71BQ8TC56 605 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 REPS1Q96D71 796 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 DAZAP1Q96EP5 407 aaKnown RBP4.64□□□□□ -1.67
USP40-209ENST00000452724 ZNF778Q96MU6 729 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 SNX18Q96RF0 628 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 TFCP2L1Q9NZI6 479 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 ASAP1Q9ULH1 1129 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 ZNF804BA4D1E1 1349 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 J3KTA2 159 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 CA12O43570 354 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 ASNA1O43681 348 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 NTSR2O95665 410 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 RENBPP51606 427 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 COPB1P53618 953 aaKnown RBP4.63□□□□□ -1.67
USP40-209ENST00000452724 TXNL4AP83876 142 aaKnown RBP4.63□□□□□ -1.67
USP40-209ENST00000452724 GALNT1Q10472 559 aaPredicted RBP4.63□□□□□ -1.67
USP40-209ENST00000452724 BLMHQ13867 455 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 PTK2BQ14289 1009 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 KCNJ12Q14500 433 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 ELF2Q15723 593 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 MTX3Q5HYI7 312 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 FAM83BQ5T0W9 1011 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 BCDIN3DQ7Z5W3 292 aaKnown RBP4.63□□□□□ -1.67
USP40-209ENST00000452724 GATAD2AQ86YP4 633 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 CLASRPQ8N2M8 674 aaKnown RBP4.63□□□□□ -1.67
USP40-209ENST00000452724 STYXQ8WUJ0 223 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 EPS8L2Q9H6S3 715 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 FSCN3Q9NQT6 498 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 SERGEFQ9UGK8 458 aa4.63□□□□□ -1.67
USP40-209ENST00000452724 PNMA6EA0A0J9YXQ4 647 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 H7C1Q1 480 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 SYT5O00445 386 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 DHHO43323 396 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 USP1O94782 785 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 TNFRSF6BO95407 300 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 ITGA5P08648 1049 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 PRR35P0CG20 571 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 APEHP13798 732 aaKnown RBP4.62□□□□□ -1.67
USP40-209ENST00000452724 KELP23276 732 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 GSTM5P46439 218 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 TRAPPC10P48553 1259 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 ALDH18A1P54886 795 aaKnown RBP4.62□□□□□ -1.67
USP40-209ENST00000452724 GPC5P78333 572 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 TFF2Q03403 129 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 TRIM71Q2Q1W2 868 aaKnown RBP4.62□□□□□ -1.67
USP40-209ENST00000452724 P3H1Q32P28 736 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 FAM90A2PQ658T7 463 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 ZNF782Q6ZMW2 699 aaPredicted RBP4.62□□□□□ -1.67
USP40-209ENST00000452724 LINC01465Q8N7H1 131 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 ATG16L2Q8NAA4 619 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 MAFAQ8NHW3 353 aaPredicted RBP4.62□□□□□ -1.67
USP40-209ENST00000452724 EDC3Q96F86 508 aaKnown RBP4.62□□□□□ -1.67
USP40-209ENST00000452724 RMDN3Q96TC7 470 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 CINPQ9BW66 212 aaPredicted RBP4.62□□□□□ -1.67
USP40-209ENST00000452724 USP29Q9HBJ7 922 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 PTPRHQ9HD43 1115 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 ASIC5Q9NY37 505 aa4.62□□□□□ -1.67
USP40-209ENST00000452724 SMIM22K7EJ46 135 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 PRAMEF2O60811 474 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 TAF5LO75529 589 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 MT-CO3P00414 261 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 CSTBP04080 98 aaKnown RBP4.61□□□□□ -1.67
USP40-209ENST00000452724 ANXA6P08133 673 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 TMIGD3P0DMS9 266 aaPredicted RBP4.61□□□□□ -1.67
USP40-209ENST00000452724 EPHB2P29323 1055 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 TUBA4AP68366 448 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 SEMA3BQ13214 749 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 BFSP2Q13515 415 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 DNASE1L3Q13609 305 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 CSHL1Q14406 222 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 GRAMD1BQ3KR37 738 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 TUBB8Q3ZCM7 444 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 CCDC38Q502W7 563 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 ZNF425Q6IV72 752 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 CCDC144NLQ6NUI1 221 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 CCDC174Q6PII3 467 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 SERPINA13PQ6UXR4 307 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 PIK3AP1Q6ZUJ8 805 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 C12orf76Q8N812 135 aaPredicted RBP4.61□□□□□ -1.67
USP40-209ENST00000452724 FAM71DQ8N9W8 422 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 OVCA2Q8WZ82 227 aa4.61□□□□□ -1.67
USP40-209ENST00000452724 PRR11Q96HE9 360 aaPredicted RBP4.61□□□□□ -1.67
USP40-209ENST00000452724 HS6ST2Q96MM7 605 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms