RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 GREM1O60565 184 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 LILRB5O75023 590 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 LTFP02788 710 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 IRF1P10914 325 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 CHRNB1P11230 501 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 SOX9P48436 509 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 MIB1Q86YT6 1006 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 CPA6Q8N4T0 437 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 GOLGA1Q92805 767 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 OTUB2Q96DC9 234 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 LMAN1LQ9HAT1 526 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 MARCH2Q9P0N8 246 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 TJP2Q9UDY2 1190 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 RASAL2Q9UJF2 1139 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 STRIP2Q9ULQ0 834 aa20.86■□□□□ 0.93
COL9A3-202ENST00000452372 SCAMP3O14828 347 aaKnown RBP20.85■□□□□ 0.93
COL9A3-202ENST00000452372 NFATC1O95644 943 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 LSM8O95777 96 aaKnown RBP20.85■□□□□ 0.93
COL9A3-202ENST00000452372 MMEP08473 750 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 CTHP32929 405 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 PBX1P40424 430 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 AMPD2Q01433 879 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 CDR2Q01850 454 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 NR1H3Q13133 447 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 GAS6Q14393 721 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 BEND5Q7L4P6 421 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 BAP1Q92560 729 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 EDEM3Q9BZQ6 932 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 ZSCAN32Q9NX65 697 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 PCDHGA2Q9Y5H1 932 aa20.85■□□□□ 0.93
COL9A3-202ENST00000452372 MYOFQ9NZM1 2061 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 STC2O76061 302 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 FYNP06241 537 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 CHRNB2P17787 502 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 GJA4P35212 333 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 PTPN20Q4JDL3 420 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 FIGNQ5HY92 759 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 MSANTD2Q6P1R3 559 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 TXNDC11Q6PKC3 985 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 FMNL3Q8IVF7 1028 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 BBS7Q8IWZ6 715 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 SLC20A1Q8WUM9 679 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 TRIM62Q9BVG3 475 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 IFNKQ9P0W0 207 aa20.84■□□□□ 0.93
COL9A3-202ENST00000452372 LSM7Q9UK45 103 aaKnown RBP20.84■□□□□ 0.93
COL9A3-202ENST00000452372 SLC12A8A0AV02 714 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 GLI1P08151 1106 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 CCDC172P0C7W6 258 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 FERP16591 822 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 YWHAZP63104 245 aaKnown RBP20.83■□□□□ 0.93
COL9A3-202ENST00000452372 FMO1Q01740 532 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 ARID5AQ03989 594 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 RHBDF2Q6PJF5 856 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 KIAA2013Q8IYS2 634 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 RNF214Q8ND24 703 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 IPO4Q8TEX9 1081 aaKnown RBP20.83■□□□□ 0.93
COL9A3-202ENST00000452372 RUBCNQ92622 972 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 FAM149B1Q96BN6 582 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 CHFRQ96EP1 664 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 NUP58Q9BVL2 599 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 DCLK3Q9C098 648 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 TTYH3Q9C0H2 523 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 SYNCQ9H7C4 482 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 ZNF510Q9Y2H8 683 aa20.83■□□□□ 0.93
COL9A3-202ENST00000452372 HBS1LQ9Y450 684 aaKnown RBP20.83■□□□□ 0.93
COL9A3-202ENST00000452372 ERBB2P04626 1255 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 CYP1A1P04798 512 aaPredicted RBP20.82■□□□□ 0.92
COL9A3-202ENST00000452372 CYP17A1P05093 508 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 NCAM1P13591 858 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 GABRB2P47870 512 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 ID4P47928 161 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 NOMO3P69849 1222 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 DHCR24Q15392 516 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 EFHC1Q5JVL4 640 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 TRIM72Q6ZMU5 477 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 Q6ZNB5 142 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 IRF2BP2Q7Z5L9 587 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 ERICH1Q86X53 443 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 ZDHHC17Q8IUH5 632 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 ATRIPQ8WXE1 791 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 C18orf8Q96DM3 657 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 POPDC2Q9HBU9 364 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 ASNSD1Q9NWL6 643 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 SFMBT1Q9UHJ3 866 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 NAALADL1Q9UQQ1 740 aa20.82■□□□□ 0.92
COL9A3-202ENST00000452372 ATG2BQ96BY7 2078 aa20.81■□□□□ 0.92
COL9A3-202ENST00000452372 KLKB1P03952 638 aa20.81■□□□□ 0.92
COL9A3-202ENST00000452372 TPM3P06753 285 aa20.81■□□□□ 0.92
COL9A3-202ENST00000452372 HMBSP08397 361 aa20.81■□□□□ 0.92
COL9A3-202ENST00000452372 SLC6A3Q01959 620 aa20.81■□□□□ 0.92
COL9A3-202ENST00000452372 TRIP4Q15650 581 aaPredicted RBP20.81■□□□□ 0.92
COL9A3-202ENST00000452372 OR6B2Q6IFH4 312 aa20.81■□□□□ 0.92
COL9A3-202ENST00000452372 FAM183BPQ6ZVS7 135 aa20.81■□□□□ 0.92
COL9A3-202ENST00000452372 CPA5Q8WXQ8 436 aa20.81■□□□□ 0.92
COL9A3-202ENST00000452372 PLD4Q96BZ4 506 aa20.81■□□□□ 0.92
COL9A3-202ENST00000452372 PIWIL1Q96J94 861 aaKnown RBP20.81■□□□□ 0.92
COL9A3-202ENST00000452372 XPO4Q9C0E2 1151 aaKnown RBP20.81■□□□□ 0.92
COL9A3-202ENST00000452372 LRRC53A6NM62 1247 aa20.8■□□□□ 0.92
COL9A3-202ENST00000452372 TRDMT1O14717 391 aaKnown RBP20.8■□□□□ 0.92
COL9A3-202ENST00000452372 CAPN9O14815 690 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms